Files in malan
MAle Lineage ANalysis
MD5
NEWS
README.md
NAMESPACE
DESCRIPTION
LICENSE
R/RcppExports.R
R/meta.R
R/print.R
R/haplotypes.R
R/data.R
R/relationship.R
R/malan.R
R/malan-package.R
R/igraph.R
src/api_build_pedigrees.cpp
src/api_simulate.cpp
src/Makevars.win
src/Makevars
src/class_SimulateChooseFather.cpp
src/api_simulate_helper.cpp
src/RcppExports.cpp
src/api_utility_misc.cpp
src/api_utility_mixtures_analyse.cpp
src/api_utility_pedigree.cpp
src/class_Population.h
src/api_utility_individual.cpp
src/class_SimulateChooseFather.h
src/class_Pedigree.h
src/api_utility_autosomal_theta_unweighted.cpp
src/api_utility_autosomal_theta_weighted.cpp
src/api_simulate_varying_size.cpp
src/api_utility_mixtures.cpp
src/api_utility_haplotypes.cpp
src/class_Population.cpp
src/api_utility_autosomal.cpp
src/helper_Individual.cpp
src/class_Pedigree.cpp
src/api_simulate.h
src/helper_generation.h
src/class_Individual.cpp
src/api_igraph.cpp
src/PROTO.cpp
src/helper_hash.h
src/malan_types.h
src/helper_generation.cpp
src/helper_Individual.h
src/test_misc.cpp
src/api_load_data.cpp
src/api_utility_individual.h
src/class_Individual.h
inst/CITATION
inst/doc/case-study-partial.R
inst/doc/case-study-partial.Rmd
inst/doc/introduction.html
inst/doc/case-study-partial.html
inst/doc/introduction.R
inst/doc/introduction.Rmd
build/vignette.rds
build/partial.rdb
tests/testthat.R
tests/testthat/test-graph.R
tests/testthat/test-autosomal.R
tests/testthat/test-relationship.R
tests/testthat/test-igraph.R
tests/testthat/test-simulate-population.R
tests/testthat/test-create-population.R
tests/testthat/test-family.R
tests/testthat/test-mixtures.R
tests/testthat/test-loadpop.R
vignettes/case-study-partial.Rmd
vignettes/introduction.Rmd
data/ystr_markers.RData
data/ystr_kits.RData
man/father_matches.Rd
man/analyse_mixture_results.Rd
man/delete_haplotypeids_hashmap.Rd
man/plot.malan_pedigree.Rd
man/get_allele_counts_genotypes.Rd
man/pedigrees_all_populate_haplotypes_custom_founders.Rd
man/sample_autosomal_genotype.Rd
man/get_pid.Rd
man/malan-package.Rd
man/print.malan_population_abort.Rd
man/from_igraph.Rd
man/sub-sub-.malan_pedigreelist.Rd
man/ystr_markers.Rd
man/meiotic_dist_threshold.Rd
man/haplotypes_to_hashes.Rd
man/get_family_info.Rd
man/construct_M.Rd
man/count_haplotype_occurrences_pedigree.Rd
man/as_tbl_graph.malan_pedigreelist.Rd
man/haplotype_partially_matches_individuals.Rd
man/get_individuals.Rd
man/pedigrees_table.Rd
man/pedigree_haplotype_matches_in_pedigree_meiosis_L1_dists.Rd
man/get_brothers.Rd
man/get_haplotype.Rd
man/meiotic_dist.Rd
man/test_create_population.Rd
man/estimate_autotheta_subpops_genotypes.Rd
man/infer_generation.Rd
man/pedigree_as_igraph.Rd
man/get_allele_counts_pids.Rd
man/sample_geneology_varying_size.Rd
man/get_haplotypes_individuals.Rd
man/get_pedigree_id.Rd
man/calc_autosomal_genotype_probs.Rd
man/pedigree_size_generation.Rd
man/get_zero_haplotype_generator.Rd
man/print.malan_population.Rd
man/calc_autosomal_genotype_conditional_cumdist.Rd
man/relationship_allele_diff_dist.Rd
man/mixture_info_by_individuals_5pers.Rd
man/get_father.Rd
man/relationship_allele_diff_dist_sym.Rd
man/get_matching_pids_from_hashmap.Rd
man/pedigrees_all_populate_autosomal.Rd
man/build_pedigrees.Rd
man/print.malan_pedigreelist.Rd
man/build_haplotype_hashmap.Rd
man/infer_generations.Rd
man/analyse_mixture_result.Rd
man/sub-sub-.malan_population.Rd
man/pedigree_haplotype_near_matches_meiosis.Rd
man/mixture_info_by_individuals_4pers.Rd
man/count_uncles.Rd
man/load_haplotypes.Rd
man/pedigree_size.Rd
man/get_uncles.Rd
man/print_individual.Rd
man/grandfather_matches.Rd
man/pedigrees_all_populate_haplotypes.Rd
man/get_pedigree_from_individual.Rd
man/haplotype_matches_individuals.Rd
man/mixture_info_by_individuals_3pers.Rd
man/pedigrees_count.Rd
man/plot.malan_pedigreelist.Rd
man/generate_get_founder_haplotype_db.Rd
man/split_by_haplotypes.Rd
man/get_haplotypes_pids.Rd
man/count_haplotype_occurrences_individuals.Rd
man/pedigrees_all_populate_haplotypes_ladder_bounded.Rd
man/brothers_matching.Rd
man/print.malan_pedigree.Rd
man/get_pedigrees_tidy.Rd
man/get_haplotypes_in_pedigree.Rd
man/estimate_autotheta_subpops_unweighted_genotypes.Rd
man/set_generation.Rd
man/get_pids_in_pedigree.Rd
man/get_pedigree_as_graph.Rd
man/get_cousins.Rd
man/generate_get_founder_haplotype_ladder.Rd
man/ystr_kits.Rd
man/get_pedigree_id_from_pid.Rd
man/get_nodes_edges.Rd
man/estimate_autotheta_subpops_unweighted_pids.Rd
man/sample_geneology.Rd
man/meioses_generation_distribution.Rd
man/population_size_generation.Rd
man/mixture_info_by_individuals_2pers.Rd
man/count_haplotype_near_matches_individuals.Rd
man/get_individual.Rd
man/estimate_autotheta_1subpop_individuals.Rd
man/get_children.Rd
man/load_individuals.Rd
man/population_populate_autosomal_infinite_alleles.Rd
man/estimate_autotheta_subpops_pids.Rd
man/get_generation.Rd
man/meiotic_radius.Rd
man/estimate_autotheta_subpops_individuals.Rd
man/estimate_autotheta_1subpop_genotypes.Rd
man/from_igraph_rcpp.Rd
man/count_brothers.Rd
