generate_all_link_phase_elim_equivalent: Generate all possible linkage phases in matrix form given the...
In mappoly: Genetic Linkage Maps in Autopolyploids
View source: R/check_phase_configurations.R
generate_all_link_phase_elim_equivalent R Documentation
Generate all possible linkage phases in matrix form given the dose
and the number of shared alleles between a inserted marker and a
pre-computed linkage configuration.
Description
Generate all possible linkage phases in matrix form given the dose
and the number of shared alleles between a inserted marker and a
pre-computed linkage configuration.
Usage
generate_all_link_phase_elim_equivalent(X, d, sh, ploidy, k1, k2)
Arguments
X
a list of matrices whose columns represent homologous
chromosomes and the rows represent markers. Each element of the
list represents a linkage phase configuration.
d
the dosage of the inserted marker
sh
the number of shared alleles between k1 (marker already
present on the sequence) and k2 (the inserted marker)
ploidy
the ploidy level
k1
marker already present on the sequence
k2
inserted marker
Value
a unique list of matrices representing linkage phases
mappoly documentation built on May 29, 2024, 6:05 a.m.
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View source: R/check_phase_configurations.R
| generate_all_link_phase_elim_equivalent | R Documentation |
Generate all possible linkage phases in matrix form given the dose and the number of shared alleles between a inserted marker and a pre-computed linkage configuration.
Description
Generate all possible linkage phases in matrix form given the dose and the number of shared alleles between a inserted marker and a pre-computed linkage configuration.
Usage
generate_all_link_phase_elim_equivalent(X, d, sh, ploidy, k1, k2)
Arguments
X |
a list of matrices whose columns represent homologous chromosomes and the rows represent markers. Each element of the list represents a linkage phase configuration. |
d |
the dosage of the inserted marker |
sh |
the number of shared alleles between k1 (marker already present on the sequence) and k2 (the inserted marker) |
ploidy |
the ploidy level |
k1 |
marker already present on the sequence |
k2 |
inserted marker |
Value
a unique list of matrices representing linkage phases
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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