get_genomic_order: Get the genomic position of markers in a sequence

In mappoly: Genetic Linkage Maps in Autopolyploids

Get the genomic position of markers in a sequence

Description

This functions gets the genomic position of markers in a sequence and return an ordered data frame with the name and position of each marker

Usage

get_genomic_order(input.seq, verbose = TRUE)

## S3 method for class 'mappoly.geno.ord'
print(x, ...)

## S3 method for class 'mappoly.geno.ord'
plot(x, ...)

Arguments

input.seq	a sequence object of class mappoly.sequence
verbose	if TRUE (default), the current progress is shown; if FALSE, no output is produced
x	an object of the class mappoly.geno.ord
...	currently ignored

Author(s)

Marcelo Mollinari, [e-mail]

Examples

s1 <- make_seq_mappoly(tetra.solcap, "all")
o1 <- get_genomic_order(s1)
plot(o1)
s.geno.ord <- make_seq_mappoly(o1)

mappoly documentation built on Jan. 6, 2023, 1:16 a.m.