get_indices_from_selected_phases: Get the indices of selected linkage phases given a threshold
In mappoly: Genetic Linkage Maps in Autopolyploids
View source: R/check_phase_configurations.R
get_indices_from_selected_phases R Documentation
Get the indices of selected linkage phases given a threshold
Description
Get the indices of selected linkage phases given a threshold
Usage
get_indices_from_selected_phases(x, thres)
Arguments
x
a data frame containing information about two markers. In
this data frame, the lines indicate the possible configuration
phases and the columns indicate the LOD for configuration phase
(ph_LOD), the recombination fraction (rf), and the LOD for
recombination fraction (rf_LOD)
thres
a threshold from which the linkage phases can be
discarded (if abs(ph_LOD) > thres)
Value
a list of indices for both parents
mappoly documentation built on Jan. 6, 2023, 1:16 a.m.
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View source: R/check_phase_configurations.R
| get_indices_from_selected_phases | R Documentation |
Get the indices of selected linkage phases given a threshold
Description
Get the indices of selected linkage phases given a threshold
Usage
get_indices_from_selected_phases(x, thres)
Arguments
x |
a data frame containing information about two markers. In this data frame, the lines indicate the possible configuration phases and the columns indicate the LOD for configuration phase (ph_LOD), the recombination fraction (rf), and the LOD for recombination fraction (rf_LOD) |
thres |
a threshold from which the linkage phases can be discarded (if abs(ph_LOD) > thres) |
Value
a list of indices for both parents
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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