loglike_hmm: Multipoint log-likelihood computation

In mappoly: Genetic Linkage Maps in Autopolyploids

Multipoint log-likelihood computation

Description

Update the multipoint log-likelihood of a given map using the method proposed by Mollinari and Garcia (2019).

Usage

loglike_hmm(input.map, input.data = NULL, verbose = FALSE)

Arguments

input.map	An object of class mappoly.map
input.data	An object of class mappoly.data, which was used to generate input.map
verbose	If TRUE, map information is shown; if FALSE(default), no output is produced

Author(s)

Marcelo Mollinari, [e-mail]

References

Mollinari, M., and Garcia, A. A. F. (2019) Linkage analysis and haplotype phasing in experimental autopolyploid populations with high ploidy level using hidden Markov models, _G3: Genes, Genomes, Genetics_. doi: 10.1534/g3.119.400378

Examples

 
  hexa.map <- loglike_hmm(maps.hexafake[[1]])
  hexa.map
 
 

mappoly documentation built on Jan. 6, 2023, 1:16 a.m.