View source: R/plot_genome_vs_map.R
plot_genome_vs_map | R Documentation |
This function plots scatterplot(s) of physical distance (in Mbp) versus the genetic
distance (in cM). Map(s) should be passed as a single object or a list of objects
of class mappoly.map
.
plot_genome_vs_map( map.list, phase.config = "best", same.ch.lg = FALSE, alpha = 1/5, size = 3 )
map.list |
A list or a single object of class |
phase.config |
A vector containing which phase configuration should be
plotted. If |
same.ch.lg |
Logical. If |
alpha |
transparency factor for SNPs points |
size |
size of the SNP points |
Marcelo Mollinari, mmollin@ncsu.edu
Mollinari, M., and Garcia, A. A. F. (2019) Linkage analysis and haplotype phasing in experimental autopolyploid populations with high ploidy level using hidden Markov models, _G3: Genes, Genomes, Genetics_. doi: 10.1534/g3.119.400378
plot_genome_vs_map(solcap.mds.map, same.ch.lg = TRUE) plot_genome_vs_map(solcap.mds.map, same.ch.lg = FALSE, alpha = 1, size = 1/2)
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