segreg_poly: Polysomic segregation frequency
In mappoly: Genetic Linkage Maps in Autopolyploids
segreg_poly R Documentation
Polysomic segregation frequency
Description
Computes the polysomic segregation frequency given a ploidy level
and the dosage of the locus in both parents. It does not consider
double reduction.
Usage
segreg_poly(ploidy, dP, dQ)
Arguments
ploidy
the ploidy level
dP
the dosage in parent P
dQ
the dosage in parent Q
Value
a vector containing the expected segregation frequency for
all possible genotypic classes.
Author(s)
Marcelo Mollinari, mmollin@ncsu.edu
References
Mollinari, M., and Garcia, A. A. F. (2019) Linkage
analysis and haplotype phasing in experimental autopolyploid
populations with high ploidy level using hidden Markov
models, _G3: Genes, Genomes, Genetics_.
doi: 10.1534/g3.119.400378
Serang O, Mollinari M, Garcia AAF (2012) Efficient Exact
Maximum a Posteriori Computation for Bayesian SNP
Genotyping in Polyploids. _PLoS ONE_ 7(2):
e30906.
Examples
# autohexaploid with two and three doses in parents P and Q,
# respectively
seg <- segreg_poly(ploidy = 6, dP = 2, dQ = 3)
barplot(seg, las = 2)
mappoly documentation built on Jan. 6, 2023, 1:16 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| segreg_poly | R Documentation |
Polysomic segregation frequency
Description
Computes the polysomic segregation frequency given a ploidy level and the dosage of the locus in both parents. It does not consider double reduction.
Usage
segreg_poly(ploidy, dP, dQ)
Arguments
ploidy |
the ploidy level |
dP |
the dosage in parent P |
dQ |
the dosage in parent Q |
Value
a vector containing the expected segregation frequency for all possible genotypic classes.
Author(s)
Marcelo Mollinari, mmollin@ncsu.edu
References
Mollinari, M., and Garcia, A. A. F. (2019) Linkage analysis and haplotype phasing in experimental autopolyploid populations with high ploidy level using hidden Markov models, _G3: Genes, Genomes, Genetics_. doi: 10.1534/g3.119.400378
Serang O, Mollinari M, Garcia AAF (2012) Efficient Exact Maximum a Posteriori Computation for Bayesian SNP Genotyping in Polyploids. _PLoS ONE_ 7(2): e30906.
Examples
# autohexaploid with two and three doses in parents P and Q, # respectively seg <- segreg_poly(ploidy = 6, dP = 2, dQ = 3) barplot(seg, las = 2)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.