update_missing: Update missing information
In mappoly: Genetic Linkage Maps in Autopolyploids
update_missing R Documentation
Update missing information
Description
Updates the missing data in the dosage matrix of an object of class
mappoly.data given a new probability threshold
Usage
update_missing(input.data, prob.thres = 0.95)
Arguments
input.data
an object of class mappoly.data
prob.thres
probability threshold to associate a marker call to a
dosage. Markers with maximum genotype probability smaller than 'prob.thres'
are considered as missing data for the dosage calling purposes
Author(s)
Marcelo Mollinari, mmollin@ncsu.edu
Examples
data.updated = update_missing(hexafake.geno.dist, prob.thres = 0.5)
print(hexafake.geno.dist)
print(data.updated)
mappoly documentation built on Jan. 6, 2023, 1:16 a.m.
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| update_missing | R Documentation |
Update missing information
Description
Updates the missing data in the dosage matrix of an object of class
mappoly.data given a new probability threshold
Usage
update_missing(input.data, prob.thres = 0.95)
Arguments
input.data |
an object of class |
prob.thres |
probability threshold to associate a marker call to a dosage. Markers with maximum genotype probability smaller than 'prob.thres' are considered as missing data for the dosage calling purposes |
Author(s)
Marcelo Mollinari, mmollin@ncsu.edu
Examples
data.updated = update_missing(hexafake.geno.dist, prob.thres = 0.5) print(hexafake.geno.dist) print(data.updated)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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