get_n_significant_conditions: Count number of conditions each effect is significant in

Description Usage Arguments Value Examples

View source: R/get_functions.R

Description

Count number of conditions each effect is significant in

Usage

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get_n_significant_conditions(
  m,
  thresh = 0.05,
  conditions = NULL,
  sig_fn = get_lfsr
)

Arguments

m

the mash result (from joint or 1by1 analysis)

thresh

indicates the threshold below which to call signals significant

conditions

which conditions to include in check (default to all)

sig_fn

the significance function used to extract significance from mash object; eg could be ashr::get_lfsr or ashr::get_lfdr

Value

a vector containing the number of significant conditions

Examples

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simdata = simple_sims(50,5,1)
data = mash_set_data(simdata$Bhat, simdata$Shat)
m = mash(data, cov_canonical(data))
get_n_significant_conditions(m)

mashr documentation built on May 24, 2021, 1:06 a.m.