View source: R/get_functions.R
get_n_significant_conditions | R Documentation |
Count number of conditions each effect is significant in
get_n_significant_conditions(
m,
thresh = 0.05,
conditions = NULL,
sig_fn = get_lfsr
)
m |
the mash result (from joint or 1by1 analysis) |
thresh |
indicates the threshold below which to call signals significant |
conditions |
which conditions to include in check (default to all) |
sig_fn |
the significance function used to extract significance from mash object; eg could be ashr::get_lfsr or ashr::get_lfdr |
a vector containing the number of significant conditions
simdata = simple_sims(50,5,1)
data = mash_set_data(simdata$Bhat, simdata$Shat)
m = mash(data, cov_canonical(data))
get_n_significant_conditions(m)
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