get_significant_results: Find effects that are significant in at least one condition

Description Usage Arguments Value Examples

View source: R/get_functions.R

Description

Find effects that are significant in at least one condition

Usage

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get_significant_results(m, thresh = 0.05, conditions = NULL, sig_fn = get_lfsr)

Arguments

m

the mash result (from joint or 1by1 analysis)

thresh

indicates the threshold below which to call signals significant

conditions

which conditions to include in check (default to all)

sig_fn

the significance function used to extract significance from mash object; eg could be ashr::get_lfsr or ashr::get_lfdr. (Small values must indicate significant.)

Value

a vector containing the indices of the significant effects, by order of most significant to least

Examples

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simdata = simple_sims(50,5,1)
data = mash_set_data(simdata$Bhat, simdata$Shat)
m = mash(data, cov_canonical(data))
get_significant_results(m)

mashr documentation built on May 24, 2021, 1:06 a.m.