Files in mashr
Multivariate Adaptive Shrinkage

configure
MD5
README.md
NAMESPACE
DESCRIPTION
LICENSE
configure.win
cleanup
R/cov_udi.R R/RcppExports.R R/est_cor.R R/likelihoods_origdata.R R/simulations_contrast.R R/get_functions.R R/posterior.R R/posterior_common_cov.R R/set_data.R R/likelihoods_scaleddata.R R/compute_covs.R R/posterior_lowmem.R R/matrix_utils.R R/simulations.R R/extreme_deconvolution.R R/data2cov.R R/plots.R R/mash.R R/opt.R R/ed.R
src/RcppExports.cpp
src/mash.cpp
src/extreme_deconvolution.cpp
src/Makevars.in
src/mash.h
inst/COPYRIGHTS
inst/CITATION
inst/doc/intro_mash.html
inst/doc/intro_correlations.Rmd inst/doc/mash_sampling.R inst/doc/intro_mashcommonbaseline.R inst/doc/intro_mashcommonbaseline.Rmd inst/doc/intro_correlations.R inst/doc/intro_mashbaselinemean.R
inst/doc/intro_correlations.html
inst/doc/flash_mash.R inst/doc/eQTL_outline.R inst/doc/intro_mash_dd.Rmd
inst/doc/intro_mashbaselinemean.html
inst/doc/mash_sampling.html
inst/doc/intro_mashbaselinemean.Rmd inst/doc/simulate_noncanon.R inst/doc/simulate_noncanon.Rmd
inst/doc/intro_mashcommonbaseline.html
inst/doc/simulate_noncanon.html
inst/doc/intro_mash.R inst/doc/intro_mash_dd.R
inst/doc/flash_mash.html
inst/doc/flash_mash.Rmd inst/doc/eQTL_outline.Rmd
inst/doc/eQTL_outline.html
inst/doc/intro_mash_dd.html
inst/doc/mash_sampling.Rmd inst/doc/intro_mash.Rmd
inst/misc/uncrustify_default.cfg
inst/misc/pre-commit.sh
inst/misc/post-commit.sh
inst/misc/LICENSE-extreme-deconvolution
inst/code/get_est_null_cor.R inst/code/test_post.R inst/code/test1.R inst/code/test_lik.R inst/code/compare_ed_vs_teem.Rmd
build/vignette.rds
tests/testthat.R tests/testthat/test_cov.R tests/testthat/test_cov_udi.R tests/testthat/test_simple_sims.R
tests/testthat/ExDeconDemo_c.log
tests/testthat/test_precomputed.R tests/testthat/test_sampling.R tests/testthat/test_Varray.R tests/testthat/test_posterior_common_cov.R tests/testthat/test_likelihood_common_cov.R tests/testthat/test_set_data.R tests/testthat/test_estimate_cor.R tests/testthat/test_likelihood.R tests/testthat/test_ash.R tests/testthat/test_ed.R tests/testthat/test_cpp_computation.R
tests/testthat/compute_posterior_matrices_data.RData
tests/testthat/test_getfunctions.R
tests/testthat/ExDeconDemo_loglike.log
tests/testthat/test_posterior.R
tests/testthat/calc_lik_matrix_data.RData
vignettes/intro_correlations.Rmd vignettes/intro_mashcommonbaseline.Rmd vignettes/intro_mash_dd.Rmd vignettes/intro_mashbaselinemean.Rmd vignettes/simulate_noncanon.Rmd vignettes/flash_mash.Rmd vignettes/eQTL_outline.Rmd vignettes/mash_sampling.Rmd vignettes/intro_mash.Rmd man/teem_wrapper.Rd man/mash_compute_vloglik.Rd man/cov_equal_effects.Rd man/bovy_wrapper.Rd man/cov_pca.Rd man/udi_model_matrix.Rd man/posterior_mean.Rd man/simple_sims2.Rd man/cov_simple_het.Rd man/get_n_significant_conditions.Rd man/posterior_cov.Rd man/mash_set_data.Rd man/contrast_matrix.Rd man/simple_sims.Rd man/cov_from_factors.Rd man/sim_contrast2.Rd man/cov_canonical.Rd man/compute_null_loglik_from_matrix.Rd man/get_pairwise_sharing.Rd man/calc_lik_vector.Rd man/estimate_null_correlation.Rd man/cov_first_singleton.Rd man/estimate_null_correlation_simple.Rd man/get_pairwise_sharing_from_samples.Rd man/mash_plot_meta.Rd man/mash_set_data_contrast.Rd man/expand_cov.Rd man/mash_compute_posterior_matrices.Rd man/compute_loglik_from_matrix_and_pi.Rd man/compute_posterior_weights.Rd man/extreme_deconvolution.Rd man/cov_ed.Rd man/sim_contrast1.Rd man/get_estimated_pi.Rd man/calc_relative_lik_matrix.Rd man/cov_all_zeros.Rd man/optimize_pi.Rd man/compute_vloglik_from_matrix_and_pi.Rd man/mash_compute_loglik.Rd man/scale_cov.Rd man/get_samples.Rd man/posterior_mean_matrix.Rd man/mash_update_data.Rd man/calc_lik_matrix.Rd man/get_log10bf.Rd man/get_significant_results.Rd man/cov_udi_single.Rd man/compute_alt_loglik_from_matrix_and_pi.Rd man/mash.Rd man/calc_lik_matrix_common_cov.Rd man/cov_flash.Rd man/make_names.Rd man/cov_udi.Rd man/compute_posterior_matrices_common_cov_R.Rd man/mash_1by1.Rd man/compute_posterior_matrices.Rd man/compute_posterior_matrices_general_R.Rd
mashr documentation built on May 24, 2021, 1:06 a.m.