miceadds: Some Additional Multiple Imputation Functions, Especially for 'mice'

Contains some auxiliary functions for multiple imputation which complements existing functionality in R. In addition to some utility functions, main features include plausible value imputation, multilevel imputation functions, imputation using partial least squares (PLS) for high dimensional predictors, nested multiple imputation.

Author Alexander Robitzsch [aut, cre], Simon Grund [aut], Thorsten Henke [aut]
Date of publication2017-01-11 17:13:21
Maintainer Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>
LicenseGPL (>= 2)
Version2.2-0

View on CRAN

Man pages

complete.miceadds: Creates Imputed Dataset from a 'mids.nmi' or 'mids.1chain'...

crlrem: R Utilities: Removing CF Line Endings

cxxfunction.copy: R Utilities: Copy of an 'Rcpp' File

data.allison: Datasets from Allison's _Missing Data_ Book

data.enders: Datasets from Enders' _Missing Data_ Book

data.graham: Datasets from Grahams _Missing Data_ Book

data.internet: Dataset Internet

data.largescale: Large-scale Dataset for Testing Purposes (Many Cases, Few...

datalist2mids: Converting a List of Multiply Imputed Data Sets into a 'mids'...

data.ma: Example Datasets for 'miceadds' Package

data.smallscale: Small-Scale Dataset for Testing Purposes (Moderate Number of...

datlist_create: Creates Objects of Class 'datlist' or 'nested.datlist'

draw.pv.ctt: Plausible Value Imputation Using a Known Measurement Error...

filename_split: Splits a File Name into Parts

files_move: Moves Files from One Directory to Another Directory

grep.vec: R Utilities: Vector Based Version of 'grep'

GroupMean: Calculation of Groupwise Descriptive Statistics for Matrices

index.dataframe: R Utilities: Include an Index to a Data Frame

jomo2datlist: Converts a 'jomo' Data Frame in Long Format into a List of...

kernelpls.fit2: Kernel PLS Regression

library_install: R Utilities: Loading a Package or Installation of a Package...

lm.cluster: Cluster Robust Standard Errors for Linear Models and General...

load.data: R Utilities: Loading/Reading Data Files using 'miceadds'

load.Rdata: R Utilities: Loading 'Rdata' Files in a Convenient Way

ma.scale2: Standardization of a Matrix

ma.wtd.statNA: Some Multivariate Descriptive Statistics for Weighted Data in...

mi.anova: Analysis of Variance for Multiply Imputed Data Sets (Using...

mice.1chain: Multiple Imputation by Chained Equations using One Chain

miceadds-defunct: Defunct 'miceadds' Functions

miceadds-package: Some Additional Multiple Imputation Functions, Especially for...

mice.impute.2l.contextual.norm: Imputation by Normal Linear Regression with Contextual...

mice.impute.2l.contextual.pmm: Imputation by Predictive Mean Matching with Contextual...

mice.impute.2l.latentgroupmean.ML: Imputation of Latent and Manifest Group Means for Multilevel...

mice.impute.2l.lmer: Imputation of a Continuous or a Binary Variable From a...

mice.impute.2lonly.function: Imputation at Level 2 (in 'miceadds')

mice.impute.bygroup: Groupwise Imputation Function

mice.impute.eap: Imputation of a Variable with a Known Posterior Distribution

mice.impute.grouped: Imputation of a Variable with Grouped Values

mice.impute.hotDeck: Imputation of a Variable Using Probabilistic Hot Deck...

mice.impute.plausible.values: Plausible Value Imputation using Classical Test Theory and...

mice.impute.pls: Imputation using Partial Least Squares for Dimension...

mice.impute.pmm3: Imputation by Predictive Mean Matching (in 'miceadds')

mice.impute.tricube.pmm: Imputation by Tricube Predictive Mean Matching

mice.impute.weighted.norm: Imputation by a Weighted Linear Normal Regression

mice.impute.weighted.pmm: Imputation by Weighted Predictive Mean Matching

mice.nmi: Nested Multiple Imputation

micombine.chisquare: Combination of Chi Square Statistics of Multiply Imputed...

micombine.cor: Inference for Correlations and Covariances for Multiply...

micombine.F: Combination of F Statistics for Multiply Imputed Datasets...

mids2datlist: Converting a 'mids', 'mids.1chain' or 'mids.nmi' Object in a...

mids2mlwin: Export 'mids' object to MLwiN

mi_dstat: Cohen's d Effect Size for Missingness Indicators

NestedImputationList: Functions for Analysis of Nested Multiply Imputed Datasets

nestedList2List: Converting a Nested List into a List (and Vice Versa)

NMIwaldtest: Wald Test for Nested Multiply Imputed Datasets

output.format1: R Utilities: Formatting R Output on the R Console

pca.covridge: Principal Component Analysis with Ridge Regularization

pool_mi: Statistical Inference for Multiply Imputed Datasets

pool.mids.nmi: Pooling for Nested Multiple Imputation

Reval: R Utilities: Evaluates a String as an Expression in R

Rhat.mice: Rhat Convergence Statistic of a 'mice' Imputation

round2: R Utilities: Rounding DIN 1333 (Kaufmaennisches Runden)

Rsessinfo: R Utilities: R Session Information

save.data: R Utilities: Saving/Writing Data Files using 'miceadds'

save.Rdata: R Utilities: Save a Data Frame in 'Rdata' Format

scale_datlist: Adding a Standardized Variable to a List of Multiply Imputed...

scan.vector: R Utilities: Scan a Character Vector

source.all: R Utilities: Source All R Files Within a Directory

stats0: Descriptive Statistics for a Vector or a Data Frame

str_C.expand.grid: R Utilities: String Paste Combined with 'expand.grid'

subset_datlist: Subsetting Multiply Imputed Datasets and Nested Multiply...

sumpreserving.rounding: Sum Preserving Rounding

systime: R Utilities: Various Strings Representing System Time

tw.imputation: Two-Way Imputation

VariableNames2String: Stringing Variable Names with Line Breaks

visitSequence.determine: Automatic Determination of a Visit Sequence in 'mice'

with.miceadds: Evaluates an Expression for (Nested) Multiply Imputed...

write.datlist: Write a List of Multiply Imputed Datasets

write.fwf2: Reading and Writing Files in Fixed Width Format

write.mice.imputation: Export Multiply Imputed Datasets from a 'mids' Object

write.pspp: Writing a Data Frame into SPSS Format Using PSPP Software

Files in this package

miceadds
miceadds/inst
miceadds/inst/NEWS
miceadds/src
miceadds/src/Makevars
miceadds/src/kernelpls_1dim_c.cpp
miceadds/src/create_interactions_c.cpp
miceadds/src/ma_scale.cpp
miceadds/src/kernelpls_algorithm.h
miceadds/src/Makevars.win
miceadds/src/ma_pmm6_csource.cpp
miceadds/NAMESPACE
miceadds/data
miceadds/data/data.ma05.rda
miceadds/data/data.graham.ex8a.rda
miceadds/data/data.allison.usnews.rda
miceadds/data/data.graham.ex8c.rda
miceadds/data/data.enders.employee.rda
miceadds/data/data.largescale.rda
miceadds/data/data.graham.ex3.rda
miceadds/data/data.ma03.rda
miceadds/data/data.allison.hip.rda
miceadds/data/data.graham.ex6.rda
miceadds/data/data.ma06.rda
miceadds/data/data.graham.ex8b.rda
miceadds/data/data.allison.gssexp.rda
miceadds/data/data.ma04.rda
miceadds/data/data.ma02.rda
miceadds/data/data.ma01.rda
miceadds/data/data.enders.eatingattitudes.rda
miceadds/data/data.internet.rda
miceadds/data/data.smallscale.rda
miceadds/data/data.enders.depression.rda
miceadds/R
miceadds/R/load.data.R miceadds/R/fast.groupmean.R miceadds/R/ma.wtd.aux.data.R miceadds/R/ma.wtd.sdNA.R miceadds/R/mice_imputation_pls_helper.R miceadds/R/complete.miceadds.R miceadds/R/mice.impute.tricube.pmm2.R miceadds/R/remove.lindep_miceadds.R miceadds/R/mice_imputation_extract_list_arguments.R miceadds/R/mice.impute.plausible.values.R miceadds/R/GroupSD.R miceadds/R/mice.impute.norm3.R miceadds/R/NMIcombine.R miceadds/R/mice_imputation_pls_scale_x.R miceadds/R/List2nestedList.R miceadds/R/str_C.expand.grid.R miceadds/R/mice_multilevel_add_groupmeans.R miceadds/R/mice.impute.pmm6.R miceadds/R/nesteddatlist2datlist.R miceadds/R/mi_dstat.R miceadds/R/mice.impute.2l.lmer.R miceadds/R/mice.impute.weighted.norm.R miceadds/R/write.fwf2.R miceadds/R/with.NestedImputationList.R miceadds/R/mice.impute.2l.latentgroupmean.ML.R miceadds/R/mice_imputation_create_interactions.R miceadds/R/lm.cluster.R miceadds/R/mice.1chain.R miceadds/R/pool.mi.R miceadds/R/save.Rdata.R miceadds/R/draw.pv.ctt.R miceadds/R/output.format1.R miceadds/R/micombine.cov.R miceadds/R/mice.impute.hotDeck.R miceadds/R/cor_avoid_zero.R miceadds/R/systime.R miceadds/R/sumpreserving.rounding.R miceadds/R/micombine.cor.R miceadds/R/quantile0.R miceadds/R/mice_imputation_pls_correlation_criteria.R miceadds/R/normalize_vector.R miceadds/R/mice_imputation_include_cluster_effect.R miceadds/R/index.dataframe.R miceadds/R/datlist_create.R miceadds/R/mice.impute.pmm3.R miceadds/R/mice_imputation_get_states.R miceadds/R/visitSequence.determine.R miceadds/R/mice_multilevel_imputation_pmm5.R miceadds/R/mice.impute.2l.contextual.norm.R miceadds/R/pca.covridge.R miceadds/R/fast.groupsum.R miceadds/R/mice_imputation_pls_print_progress1.R miceadds/R/mice_multilevel_imputation_draw_residuals.R miceadds/R/kernelpls.fit2.R miceadds/R/sub.micombine.cor.R miceadds/R/mean0.R miceadds/R/sub.micombine.cov.R miceadds/R/within.nested.datlist.R miceadds/R/mice.impute.2l.contextual.pmm.R miceadds/R/cor2fisher.R miceadds/R/withPool.R miceadds/R/mice.impute.pmm4.R miceadds/R/crlem.R miceadds/R/VariableNames2String.R miceadds/R/within.NestedImputationList.R miceadds/R/Rhat.mice.R miceadds/R/mice.impute.2lonly.pmm2.R miceadds/R/MIwaldtest.R miceadds/R/latent.regression.em.R miceadds/R/write.pspp.R miceadds/R/create.designMatrices.waldtest.R miceadds/R/write.mice.imputation.R miceadds/R/Rhat1.R miceadds/R/with.nested.datlist.R miceadds/R/mice.impute.pmm5.R miceadds/R/tw.mcmc.imputation.R miceadds/R/nested.datlist2datlist.R miceadds/R/mice_imputation_prepare_2l_functions.R miceadds/R/mice.impute.2l.pls.R miceadds/R/mice_multilevel_impute_groupmean.R miceadds/R/mice.impute.2l.continuous.R miceadds/R/mice.impute.2l.groupmean.elim.R miceadds/R/mice.impute.pls.R miceadds/R/subset_datlist.R miceadds/R/Rsessinfo.R miceadds/R/ma.wtd.quantileNA.R miceadds/R/plausible.value.imputation.R miceadds/R/mice_imputation_pls_do_impute.R miceadds/R/summary.mira.nmi.R miceadds/R/summary.mipo.nmi.R miceadds/R/sd0.R miceadds/R/write.datlist.R miceadds/R/mice.impute.2l.pmm.R miceadds/R/nestedList2List.R miceadds/R/mice_imputation_pls_print_progress2.R miceadds/R/ma.wtd.corNA.R miceadds/R/include.2l.predictors_v1.R miceadds/R/library_install.R miceadds/R/mice.impute.tricube.pmm.R miceadds/R/norm.draw3.R miceadds/R/round2.R miceadds/R/fisher2cor.R miceadds/R/filename_split.R miceadds/R/mice.impute.2lonly.norm2.R miceadds/R/min0.R miceadds/R/NMIextract.R miceadds/R/pool.mids.nmi.R miceadds/R/mice.impute.2lonly.function.R miceadds/R/micombine.chisquare.R miceadds/R/grep.vec.R miceadds/R/datalist2mids.R miceadds/R/mice_imputation_pls_include_interactions.R miceadds/R/mice_imputation_pls_pca_reduction.R miceadds/R/prop_miss.R miceadds/R/mice_imputation_pls_print_progress3.R miceadds/R/ma.wtd.meanNA.R miceadds/R/mice_multilevel_imputation_draw_random_effects.R miceadds/R/norm.draw2.R miceadds/R/mice.impute.2l.plausible.values.R miceadds/R/micombine.F.R miceadds/R/ma.wtd.covNA.R miceadds/R/within.datlist.R miceadds/R/mice.impute.2l.eap.R miceadds/R/GroupSum.R miceadds/R/glm.cluster.R miceadds/R/NestedImputationList.R miceadds/R/jomo2datlist.R miceadds/R/mice_imputation_pls_largest_correlations.R miceadds/R/scale_datlist.R miceadds/R/within.imputationList.R miceadds/R/mice.impute.2l.groupmean.R miceadds/R/mice.impute.2l.latentgroupmean.MCMC.R miceadds/R/ma.wtd.skewnessNA.R miceadds/R/mice.impute.2l.binary.R miceadds/R/vector2matrix.R miceadds/R/antilogit.R miceadds/R/with.mids.1chain.R miceadds/R/mice.impute.weighted.pmm.R miceadds/R/with.mids.nmi.R miceadds/R/load.Rdata2.R miceadds/R/mice_imputation_pls_include_quadratics.R miceadds/R/NMIwaldtest.R miceadds/R/predict.kernelfit.pls2.R miceadds/R/mice.impute.eap.R miceadds/R/mice_imputation_pls_estimate_pls_regression.R miceadds/R/stats0.R miceadds/R/GroupMean.R miceadds/R/mids2mlwin.R miceadds/R/tw.imputation.R miceadds/R/mi.anova.R miceadds/R/save.data.R miceadds/R/pool.nmi.scalar.helper.R miceadds/R/mice_multilevel_imputation_blme_args.R miceadds/R/MIcombine.NestedImputationResultList.R miceadds/R/mice_imputation_multilevel_include_2l_predictors.R miceadds/R/var0.R miceadds/R/load.Rdata.R miceadds/R/Reval.R miceadds/R/max0.R miceadds/R/covTest.R miceadds/R/mids2datlist.R miceadds/R/scan0.R miceadds/R/source.all.R miceadds/R/files_move.R miceadds/R/nested.datlist_create.R miceadds/R/file_path.R miceadds/R/mice_multilevel_doCall_suppressWarnings.R miceadds/R/mice_imputation_weighted_norm_draw.R miceadds/R/mice_multilevel_draw_rnorm1.R miceadds/R/mice_multilevel_create_formula.R miceadds/R/mice_multilevel_draw_binomial.R miceadds/R/ma.wtd.curtosisNA.R miceadds/R/zzz.R miceadds/R/mice.nmi.R miceadds/R/mice.impute.2l.pls2.R miceadds/R/read.fwf2.R miceadds/R/plausible.value.draw.R miceadds/R/mice.impute.bygroup.R miceadds/R/cxxfunction.copy.R miceadds/R/subset_nested.datlist.R miceadds/R/mice.impute.grouped.R miceadds/R/with.datlist.R miceadds/R/ma.scale2.R
miceadds/MD5
miceadds/DESCRIPTION
miceadds/man
miceadds/man/sumpreserving.rounding.Rd miceadds/man/Rhat.mice.Rd miceadds/man/mids2mlwin.Rd miceadds/man/data.smallscale.Rd miceadds/man/mice.impute.weighted.norm.Rd miceadds/man/data.allison.Rd miceadds/man/write.datlist.Rd miceadds/man/mice.impute.2l.contextual.pmm.Rd miceadds/man/data.graham.Rd miceadds/man/data.internet.Rd miceadds/man/Reval.Rd miceadds/man/ma.wtd.statNA.Rd miceadds/man/mice.impute.2l.latentgroupmean.ML.Rd miceadds/man/mice.impute.eap.Rd miceadds/man/write.fwf2.Rd miceadds/man/GroupMean.Rd miceadds/man/NestedImputationList.Rd miceadds/man/load.data.Rd miceadds/man/kernelpls.fit2.Rd miceadds/man/mice.impute.2l.lmer.Rd miceadds/man/mice.nmi.Rd miceadds/man/subset_datlist.Rd miceadds/man/mice.impute.hotDeck.Rd miceadds/man/jomo2datlist.Rd miceadds/man/micombine.chisquare.Rd miceadds/man/index.dataframe.Rd miceadds/man/micombine.cor.Rd miceadds/man/stats0.Rd miceadds/man/pool.mids.nmi.Rd miceadds/man/data.largescale.Rd miceadds/man/round2.Rd miceadds/man/visitSequence.determine.Rd miceadds/man/data.enders.Rd miceadds/man/mi_dstat.Rd miceadds/man/lm.cluster.Rd miceadds/man/source.all.Rd miceadds/man/NMIwaldtest.Rd miceadds/man/mice.impute.tricube.pmm.Rd miceadds/man/mice.impute.pmm3.Rd miceadds/man/Rsessinfo.Rd miceadds/man/mice.impute.pls.Rd miceadds/man/filename_split.Rd miceadds/man/miceadds-package.Rd miceadds/man/nestedList2List.Rd miceadds/man/datlist_create.Rd miceadds/man/mice.impute.2lonly.function.Rd miceadds/man/with.miceadds.Rd miceadds/man/mice.impute.plausible.values.Rd miceadds/man/grep.vec.Rd miceadds/man/miceadds-defunct.Rd miceadds/man/systime.Rd miceadds/man/str_C.expand.grid.Rd miceadds/man/files_move.Rd miceadds/man/mice.1chain.Rd miceadds/man/load.Rdata.Rd miceadds/man/library_install.Rd miceadds/man/write.pspp.Rd miceadds/man/mice.impute.bygroup.Rd miceadds/man/scale_datlist.Rd miceadds/man/complete.miceadds.Rd miceadds/man/mi.anova.Rd miceadds/man/cxxfunction.copy.Rd miceadds/man/pool_mi.Rd miceadds/man/write.mice.imputation.Rd miceadds/man/draw.pv.ctt.Rd miceadds/man/mice.impute.weighted.pmm.Rd miceadds/man/tw.imputation.Rd miceadds/man/mice.impute.grouped.Rd miceadds/man/save.Rdata.Rd miceadds/man/save.data.Rd miceadds/man/scan.vector.Rd miceadds/man/output.format1.Rd miceadds/man/ma.scale2.Rd miceadds/man/VariableNames2String.Rd miceadds/man/mice.impute.2l.contextual.norm.Rd miceadds/man/mids2datlist.Rd miceadds/man/crlrem.Rd miceadds/man/data.ma.Rd miceadds/man/micombine.F.Rd miceadds/man/pca.covridge.Rd miceadds/man/datalist2mids.Rd

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