miceadds: Some Additional Multiple Imputation Functions, Especially for 'mice'

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Contains some auxiliary functions for multiple imputation which complements existing functionality in R. In addition to some utility functions, main features include plausible value imputation, multilevel imputation functions, imputation using partial least squares (PLS) for high dimensional predictors, nested multiple imputation, and two-way imputation.

Author
Alexander Robitzsch [aut, cre], Simon Grund [aut], Thorsten Henke [aut]
Date of publication
2016-11-25 19:48:08
Maintainer
Alexander Robitzsch <robitzsch@ipn.uni-kiel.de>
License
GPL (>= 2)
Version
2.1-0

View on CRAN

Man pages

complete.miceadds
Creates Imputed Dataset from a 'mids.nmi' or 'mids.1chain'...
crlrem
R Utilities: Removing CF Line Endings
cxxfunction.copy
R Utilities: Copy of an 'Rcpp' File
data.allison
Datasets from Allison's _Missing Data_ Book
data.enders
Datasets from Enders' _Missing Data_ Book
data.graham
Datasets from Grahams _Missing Data_ Book
data.internet
Dataset Internet
data.largescale
Large-scale Dataset for Testing Purposes (Many Cases, Few...
datalist2mids
Converting a List of Multiply Imputed Data Sets into a 'mids'...
data.ma
Example Datasets for 'miceadds' Package
data.smallscale
Small-Scale Dataset for Testing Purposes (Moderate Number of...
datlist_create
Creates Objects of Class 'datlist' or 'nested.datlist'
draw.pv.ctt
Plausible Value Imputation Using a Known Measurement Error...
filename_split
Splits a File Name into Parts
files_move
Moves Files from One Directory to Another Directory
grep.vec
R Utilities: Vector Based Version of 'grep'
GroupMean
Calculation of Groupwise Descriptive Statistics for Matrices
index.dataframe
R Utilities: Include an Index to a Data Frame
jomo2datlist
Converts a 'jomo' Data Frame in Long Format into a List of...
kernelpls.fit2
Kernel PLS Regression
library_install
R Utilities: Loading a Package or Installation of a Package...
lm.cluster
Cluster Robust Standard Errors for Linear Models and General...
load.data
R Utilities: Loading/Reading Data Files using 'miceadds'
load.Rdata
R Utilities: Loading 'Rdata' Files in a Convenient Way
ma.scale2
Standardization of a Matrix
ma.wtd.statNA
Some Multivariate Descriptive Statistics for Weighted Data in...
mi.anova
Analysis of Variance for Multiply Imputed Data Sets (Using...
mice.1chain
Multiple Imputation by Chained Equations using One Chain
miceadds-defunct
Defunct 'miceadds' Functions
miceadds-package
Some Additional Multiple Imputation Functions, Especially for...
mice.impute.2l.contextual.norm
Imputation by Normal Linear Regression with Contextual...
mice.impute.2l.contextual.pmm
Imputation by Predictive Mean Matching with Contextual...
mice.impute.2l.latentgroupmean.ML
Imputation of Latent and Manifest Group Means for Multilevel...
mice.impute.2l.lmer
Imputation of a Continuous or a Binary Variable From a...
mice.impute.2lonly.function
Imputation at Level 2 (in 'miceadds')
mice.impute.bygroup
Groupwise Imputation Function
mice.impute.eap
Imputation of a Variable with a Known Posterior Distribution
mice.impute.grouped
Imputation of a Variable with Grouped Values
mice.impute.hotDeck
Imputation of a Variable Using Probabilistic Hot Deck...
mice.impute.plausible.values
Plausible Value Imputation using Classical Test Theory and...
mice.impute.pls
Imputation using Partial Least Squares for Dimension...
mice.impute.pmm3
Imputation by Predictive Mean Matching (in 'miceadds')
mice.impute.tricube.pmm
Imputation by Tricube Predictive Mean Matching
mice.impute.weighted.norm
Imputation by a Weighted Linear Normal Regression
mice.impute.weighted.pmm
Imputation by Weighted Predictive Mean Matching
mice.nmi
Nested Multiple Imputation
micombine.chisquare
Combination of Chi Square Statistics of Multiply Imputed...
micombine.cor
Inference for Correlations and Covariances for Multiply...
micombine.F
Combination of F Statistics for Multiply Imputed Datasets...
mids2datlist
Converting a 'mids', 'mids.1chain' or 'mids.nmi' Object in a...
mids2mlwin
Export 'mids' object to MLwiN
mi_dstat
Cohen's d Effect Size for Missingness Indicators
NestedImputationList
Functions for Analysis of Nested Multiply Imputed Datasets
nestedList2List
Converting a Nested List into a List (and Vice Versa)
NMIwaldtest
Wald Test for Nested Multiply Imputed Datasets
output.format1
R Utilities: Formatting R Output on the R Console
pca.covridge
Principal Component Analysis with Ridge Regularization
pool_mi
Statistical Inference for Multiply Imputed Datasets
pool.mids.nmi
Pooling for Nested Multiple Imputation
Reval
R Utilities: Evaluates a String as an Expression in R
Rhat.mice
Rhat Convergence Statistic of a 'mice' Imputation
round2
R Utilities: Rounding DIN 1333 (Kaufmaennisches Runden)
Rsessinfo
R Utilities: R Session Information
save.data
R Utilities: Saving/Writing Data Files using 'miceadds'
save.Rdata
R Utilities: Save a Data Frame in 'Rdata' Format
scale_datlist
Adding a Standardized Variable to a List of Multiply Imputed...
scan.vector
R Utilities: Scan a Character Vector
source.all
R Utilities: Source All R Files Within a Directory
str_C.expand.grid
R Utilities: String Paste Combined with 'expand.grid'
subset_datlist
Subsetting Multiply Imputed Datasets and Nested Multiply...
sumpreserving.rounding
Sum Preserving Rounding
systime
R Utilities: Various Strings Representing System Time
tw.imputation
Two-Way Imputation
VariableNames2String
Stringing Variable Names with Line Breaks
visitSequence.determine
Automatic Determination of a Visit Sequence in 'mice'
with.miceadds
Evaluates an Expression for (Nested) Multiply Imputed...
write.datlist
Write a List of Multiply Imputed Datasets
write.fwf2
Reading and Writing Files in Fixed Width Format
write.mice.imputation
Export Multiply Imputed Datasets from a 'mids' Object
write.pspp
Writing a Data Frame into SPSS Format Using PSPP Software

Files in this package

miceadds
miceadds/inst
miceadds/inst/NEWS
miceadds/src
miceadds/src/Makevars
miceadds/src/kernelpls_1dim_c.cpp
miceadds/src/create_interactions_c.cpp
miceadds/src/ma_scale.cpp
miceadds/src/kernelpls_algorithm.h
miceadds/src/Makevars.win
miceadds/src/ma_pmm6_csource.cpp
miceadds/NAMESPACE
miceadds/data
miceadds/data/data.ma05.rda
miceadds/data/data.graham.ex8a.rda
miceadds/data/data.allison.usnews.rda
miceadds/data/data.graham.ex8c.rda
miceadds/data/data.enders.employee.rda
miceadds/data/data.largescale.rda
miceadds/data/data.graham.ex3.rda
miceadds/data/data.ma03.rda
miceadds/data/data.allison.hip.rda
miceadds/data/data.graham.ex6.rda
miceadds/data/data.ma06.rda
miceadds/data/data.graham.ex8b.rda
miceadds/data/data.allison.gssexp.rda
miceadds/data/data.ma04.rda
miceadds/data/data.ma02.rda
miceadds/data/data.ma01.rda
miceadds/data/data.enders.eatingattitudes.rda
miceadds/data/data.internet.rda
miceadds/data/data.smallscale.rda
miceadds/data/data.enders.depression.rda
miceadds/R
miceadds/R/load.data.R
miceadds/R/fast.groupmean.R
miceadds/R/ma.wtd.aux.data.R
miceadds/R/ma.wtd.sdNA.R
miceadds/R/mice_imputation_pls_helper.R
miceadds/R/complete.miceadds.R
miceadds/R/mice.impute.tricube.pmm2.R
miceadds/R/remove.lindep_miceadds.R
miceadds/R/mice_imputation_extract_list_arguments.R
miceadds/R/mice.impute.plausible.values.R
miceadds/R/GroupSD.R
miceadds/R/mice.impute.norm3.R
miceadds/R/NMIcombine.R
miceadds/R/mice_imputation_pls_scale_x.R
miceadds/R/List2nestedList.R
miceadds/R/str_C.expand.grid.R
miceadds/R/mice_multilevel_add_groupmeans.R
miceadds/R/mice.impute.pmm6.R
miceadds/R/nesteddatlist2datlist.R
miceadds/R/mi_dstat.R
miceadds/R/mice.impute.2l.lmer.R
miceadds/R/mice.impute.weighted.norm.R
miceadds/R/write.fwf2.R
miceadds/R/with.NestedImputationList.R
miceadds/R/mice.impute.2l.latentgroupmean.ML.R
miceadds/R/mice_imputation_create_interactions.R
miceadds/R/lm.cluster.R
miceadds/R/mice.1chain.R
miceadds/R/pool.mi.R
miceadds/R/draw.pv.ctt.R
miceadds/R/micombine.cov.R
miceadds/R/mice.impute.hotDeck.R
miceadds/R/systime.R
miceadds/R/sumpreserving.rounding.R
miceadds/R/micombine.cor.R
miceadds/R/mice_imputation_pls_correlation_criteria.R
miceadds/R/normalize_vector.R
miceadds/R/mice_imputation_include_cluster_effect.R
miceadds/R/datlist_create.R
miceadds/R/mice.impute.pmm3.R
miceadds/R/mice_imputation_get_states.R
miceadds/R/visitSequence.determine.R
miceadds/R/mice_multilevel_imputation_pmm5.R
miceadds/R/mice.impute.2l.contextual.norm.R
miceadds/R/pca.covridge.R
miceadds/R/fast.groupsum.R
miceadds/R/mice_imputation_pls_print_progress1.R
miceadds/R/mice_multilevel_imputation_draw_residuals.R
miceadds/R/kernelpls.fit2.R
miceadds/R/sub.micombine.cor.R
miceadds/R/sub.micombine.cov.R
miceadds/R/within.nested.datlist.R
miceadds/R/mice.impute.2l.contextual.pmm.R
miceadds/R/cor2fisher.R
miceadds/R/withPool.R
miceadds/R/mice.impute.pmm4.R
miceadds/R/VariableNames2String.R
miceadds/R/within.NestedImputationList.R
miceadds/R/Rhat.mice.R
miceadds/R/mice.impute.2lonly.pmm2.R
miceadds/R/MIwaldtest.R
miceadds/R/latent.regression.em.R
miceadds/R/write.pspp.R
miceadds/R/create.designMatrices.waldtest.R
miceadds/R/write.mice.imputation.R
miceadds/R/with.nested.datlist.R
miceadds/R/mice.impute.pmm5.R
miceadds/R/tw.mcmc.imputation.R
miceadds/R/nested.datlist2datlist.R
miceadds/R/mice_imputation_prepare_2l_functions.R
miceadds/R/mice.impute.2l.pls.R
miceadds/R/mice_multilevel_impute_groupmean.R
miceadds/R/cppfunction.R
miceadds/R/mice.impute.2l.continuous.R
miceadds/R/mice.impute.2l.groupmean.elim.R
miceadds/R/mice.impute.pls.R
miceadds/R/subset_datlist.R
miceadds/R/Rsessinfo.R
miceadds/R/ma.wtd.quantileNA.R
miceadds/R/plausible.value.imputation.R
miceadds/R/mice_imputation_pls_do_impute.R
miceadds/R/summary.mira.nmi.R
miceadds/R/summary.mipo.nmi.R
miceadds/R/write.datlist.R
miceadds/R/mice.impute.2l.pmm.R
miceadds/R/nestedList2List.R
miceadds/R/mice_imputation_pls_print_progress2.R
miceadds/R/ma.wtd.corNA.R
miceadds/R/include.2l.predictors_v1.R
miceadds/R/library_install.R
miceadds/R/mice.impute.tricube.pmm.R
miceadds/R/norm.draw3.R
miceadds/R/round2.R
miceadds/R/fisher2cor.R
miceadds/R/filename_split.R
miceadds/R/mice.impute.2lonly.norm2.R
miceadds/R/NMIextract.R
miceadds/R/pool.mids.nmi.R
miceadds/R/mice.impute.2lonly.function.R
miceadds/R/micombine.chisquare.R
miceadds/R/datalist2mids.R
miceadds/R/mice_imputation_pls_include_interactions.R
miceadds/R/mice_imputation_pls_pca_reduction.R
miceadds/R/mice_imputation_pls_print_progress3.R
miceadds/R/ma.wtd.meanNA.R
miceadds/R/mice_multilevel_imputation_draw_random_effects.R
miceadds/R/norm.draw2.R
miceadds/R/mice.impute.2l.plausible.values.R
miceadds/R/micombine.F.R
miceadds/R/ma.wtd.covNA.R
miceadds/R/within.datlist.R
miceadds/R/mice.impute.2l.eap.R
miceadds/R/GroupSum.R
miceadds/R/glm.cluster.R
miceadds/R/NestedImputationList.R
miceadds/R/jomo2datlist.R
miceadds/R/mice_imputation_pls_largest_correlations.R
miceadds/R/scale_datlist.R
miceadds/R/within.imputationList.R
miceadds/R/mice.impute.2l.groupmean.R
miceadds/R/mice.impute.2l.latentgroupmean.MCMC.R
miceadds/R/ma.wtd.skewnessNA.R
miceadds/R/mice.impute.2l.binary.R
miceadds/R/vector2matrix.R
miceadds/R/antilogit.R
miceadds/R/with.mids.1chain.R
miceadds/R/mice.impute.weighted.pmm.R
miceadds/R/with.mids.nmi.R
miceadds/R/mice_imputation_pls_include_quadratics.R
miceadds/R/NMIwaldtest.R
miceadds/R/predict.kernelfit.pls2.R
miceadds/R/mice.impute.eap.R
miceadds/R/mice_imputation_pls_estimate_pls_regression.R
miceadds/R/GroupMean.R
miceadds/R/mids2mlwin.R
miceadds/R/tw.imputation.R
miceadds/R/mi.anova.R
miceadds/R/Rutils.R
miceadds/R/save.data.R
miceadds/R/pool.nmi.scalar.helper.R
miceadds/R/mice_multilevel_imputation_blme_args.R
miceadds/R/MIcombine.NestedImputationResultList.R
miceadds/R/mice_imputation_multilevel_include_2l_predictors.R
miceadds/R/covTest.R
miceadds/R/mids2datlist.R
miceadds/R/scan0.R
miceadds/R/files_move.R
miceadds/R/nested.datlist_create.R
miceadds/R/file_path.R
miceadds/R/mice_multilevel_doCall_suppressWarnings.R
miceadds/R/mice_imputation_weighted_norm_draw.R
miceadds/R/mice_multilevel_draw_rnorm1.R
miceadds/R/mice_multilevel_create_formula.R
miceadds/R/mice_multilevel_draw_binomial.R
miceadds/R/ma.wtd.curtosisNA.R
miceadds/R/zzz.R
miceadds/R/mice.nmi.R
miceadds/R/mice.impute.2l.pls2.R
miceadds/R/read.fwf2.R
miceadds/R/plausible.value.draw.R
miceadds/R/mice.impute.bygroup.R
miceadds/R/subset_nested.datlist.R
miceadds/R/mice.impute.grouped.R
miceadds/R/with.datlist.R
miceadds/R/ma.scale2.R
miceadds/MD5
miceadds/DESCRIPTION
miceadds/man
miceadds/man/sumpreserving.rounding.Rd
miceadds/man/Rhat.mice.Rd
miceadds/man/mids2mlwin.Rd
miceadds/man/data.smallscale.Rd
miceadds/man/mice.impute.weighted.norm.Rd
miceadds/man/data.allison.Rd
miceadds/man/write.datlist.Rd
miceadds/man/mice.impute.2l.contextual.pmm.Rd
miceadds/man/data.graham.Rd
miceadds/man/data.internet.Rd
miceadds/man/Reval.Rd
miceadds/man/ma.wtd.statNA.Rd
miceadds/man/mice.impute.2l.latentgroupmean.ML.Rd
miceadds/man/mice.impute.eap.Rd
miceadds/man/write.fwf2.Rd
miceadds/man/GroupMean.Rd
miceadds/man/NestedImputationList.Rd
miceadds/man/load.data.Rd
miceadds/man/kernelpls.fit2.Rd
miceadds/man/mice.impute.2l.lmer.Rd
miceadds/man/mice.nmi.Rd
miceadds/man/subset_datlist.Rd
miceadds/man/mice.impute.hotDeck.Rd
miceadds/man/jomo2datlist.Rd
miceadds/man/micombine.chisquare.Rd
miceadds/man/index.dataframe.Rd
miceadds/man/micombine.cor.Rd
miceadds/man/pool.mids.nmi.Rd
miceadds/man/data.largescale.Rd
miceadds/man/round2.Rd
miceadds/man/visitSequence.determine.Rd
miceadds/man/data.enders.Rd
miceadds/man/mi_dstat.Rd
miceadds/man/lm.cluster.Rd
miceadds/man/source.all.Rd
miceadds/man/NMIwaldtest.Rd
miceadds/man/mice.impute.tricube.pmm.Rd
miceadds/man/mice.impute.pmm3.Rd
miceadds/man/Rsessinfo.Rd
miceadds/man/mice.impute.pls.Rd
miceadds/man/filename_split.Rd
miceadds/man/miceadds-package.Rd
miceadds/man/nestedList2List.Rd
miceadds/man/datlist_create.Rd
miceadds/man/mice.impute.2lonly.function.Rd
miceadds/man/with.miceadds.Rd
miceadds/man/mice.impute.plausible.values.Rd
miceadds/man/grep.vec.Rd
miceadds/man/miceadds-defunct.Rd
miceadds/man/systime.Rd
miceadds/man/str_C.expand.grid.Rd
miceadds/man/files_move.Rd
miceadds/man/mice.1chain.Rd
miceadds/man/load.Rdata.Rd
miceadds/man/library_install.Rd
miceadds/man/write.pspp.Rd
miceadds/man/mice.impute.bygroup.Rd
miceadds/man/scale_datlist.Rd
miceadds/man/complete.miceadds.Rd
miceadds/man/mi.anova.Rd
miceadds/man/cxxfunction.copy.Rd
miceadds/man/pool_mi.Rd
miceadds/man/write.mice.imputation.Rd
miceadds/man/draw.pv.ctt.Rd
miceadds/man/mice.impute.weighted.pmm.Rd
miceadds/man/tw.imputation.Rd
miceadds/man/mice.impute.grouped.Rd
miceadds/man/save.Rdata.Rd
miceadds/man/save.data.Rd
miceadds/man/scan.vector.Rd
miceadds/man/output.format1.Rd
miceadds/man/ma.scale2.Rd
miceadds/man/VariableNames2String.Rd
miceadds/man/mice.impute.2l.contextual.norm.Rd
miceadds/man/mids2datlist.Rd
miceadds/man/crlrem.Rd
miceadds/man/data.ma.Rd
miceadds/man/micombine.F.Rd
miceadds/man/pca.covridge.Rd
miceadds/man/datalist2mids.Rd