Files in miceadds

Some Additional Multiple Imputation Functions, Especially for 'mice'

MD5

README.md

NAMESPACE

DESCRIPTION

R/RcppExports.R R/mice_inits.R R/mice_imputation_smcfcs_require_namespace.R R/with.mids.nmi.R R/Rsessinfo.R R/mice_imputation_input_data_frame.R R/mice_imputation_smcfcs_evaluate_loglikelihood_model.R R/ma_rhat.R R/mice.nmi.R R/syn_da_extend_vector.R R/pca.covridge.R R/cor_avoid_zero.R R/save_data_calc_filename.R R/mice_multilevel_draw_binomial.R R/predict.kernelfit.pls2.R R/ma.wtd.sdNA.R R/mice_imputation_refresh_update_factor.R R/mice.impute.weighted.norm.R R/ma_exists.R R/jomo2mids.R R/mice.impute.constant.R R/sumpreserving.rounding.R R/MIwaldtest_qhat2list.R R/tw.imputation.R R/complete.miceadds.R R/filename_split_vec.R R/create_interactions.R R/NMIcombine_include_dimnames.R R/mi.anova.R R/lm_cluster_subset.R R/mice.impute.pmm5.R R/mice_multilevel_add_groupmeans.R R/read.fwf2.R R/mice_imputation_pls_pmm_match.R R/summaryMIwaldtest_linear_hyp.R R/Rfunction_include_argument_values.R R/datlist_create.R R/str_C.expand.grid.R R/ma.scale2.R R/mice_impute_imputeR_draw_bootstrap.R R/scan.vec.R R/ma_wtd_stat_prepare_data.R R/mice.impute.2l.pmm.R R/with.NestedImputationList.R R/glm.cluster.R R/miceadds_import_mitools_imputationList.R R/micombine_cor_compute.R R/syn_mice_create_argument_list.R R/load.data.R R/mice_imputation_tricube_pmm_match.R R/summary.mira.nmi.R R/GroupMean.R R/mice_imputation_create_interactions.R R/mice_imputation_pls_print_progress3.R R/gm.R R/string_find_first.R R/Rcppfunction_remove_classes.R R/mice_imputation_pls_print_progress2.R R/grepvec.R R/mice_imputation_smcfcs_estimate_model.R R/string_extract_part.R R/miceadds_ginv.R R/NMIwaldtest_qhat2list.R R/mice_multilevel_imputation_blme_args.R R/miceadds_weighted_colMeans.R R/miceadds_call_internal.R R/VariableNames2String.R R/mice_imputation_extract_parameters_yj.R R/write_fwf2_format2.R R/visitSequence_determine_add_entry.R R/ma.wtd.corNA.R R/miceadds_weighted_scaling_y.R R/ma_colQuantile.R R/include.2l.predictors_v1.R R/syn_mice_catch_arguments.R R/mice.impute.2l.groupmean.elim.R R/coef.lmer_vcov.R R/ml_mcmc_parameter_index_matrix.R R/mice.impute.pmm6.R R/ma.wtd.covNA.R R/ml_mcmc_create_parameter_index.R R/summary.ml_mcmc.R R/subset_datlist.R R/mice_ml_lmer_collect_lme4_input.R R/mice.impute.2lonly.function.R R/mice_imputation_norm_draw.R R/inverse_logit.R R/mice_ml_lmer_interactions_pls.R R/mice_1chain_check_input.R R/mice.impute.weighted.pmm.R R/mice_imputation_pls_do_impute.R R/visitSequence_determine_equal_vecs.R R/ma.wtd.quantileNA.R R/ma_lme4_formula_design_matrices.R R/ANSI_matrix_include_rows.R R/nnig_coef.R R/mice.impute.imputeR.lmFun.R R/source.all.R R/visitSequence_determine_handle_variable.R R/mice_imputation_pls_type_multilevel_models.R R/mice_imputation_define_wy.R R/Revalpr_round.R R/nestedList2List.R R/miceadds_import_mitools_MIcombine.R R/subset_nested.datlist.R R/cxxfunction.copy.R R/mice.impute.hotDeck.R R/lmer_pool.R R/syn_da_compute_pls_factors.R R/mice.impute.2l.continuous.R R/pool.mids.nmi.R R/ANSI_fomat_latex_table.R R/mice.impute.2l.latentgroupmean.mcmc.R R/string_to_matrix.R R/load.files.R R/syn.constant.R R/mice.impute.pls.R R/lmer_pool_wrapper.R R/mice_imputation_factor_pmm_convert_factor.R R/mice_impute_pls_catpmm_R2.R R/crlrem.R R/write.pspp.R R/sirt_subset_object.R R/mice_imputation_args_include_wy.R R/micombine.F.R R/vcov.ml_mcmc.R R/vcov.lmer_vcov.R R/mids2mlwin.R R/mice_imputation_extract_parameters_lm.R R/save.data.R R/mean0.R R/mice.impute.lm.R R/Revalpr.R R/NestedImputationList.R R/mice.impute.lm_fun.R R/mice_imputation_include_cluster_effect.R R/mice_ml_lmer_aggregate_data_higher_level.R R/NMIwaldtest.R R/MIwaldtest.R R/covTest.R R/mice_imputation_pls_print_progress1.R R/syn_da_create_formula.R R/load.Rdata2.R R/MIcombine.NestedImputationResultList.R R/write.fwf2.R R/miceadds_matrix2.R R/ma_colSD.R R/mice.impute.lqs.R R/mice.impute.2l.groupmean.R R/mice.impute.bygroup.R R/mice.1chain.R R/plausible.value.draw.R R/ma.wtd.skewnessNA.R R/MIwaldtest_u2list.R R/with.nested.datlist.R R/ma_inherits_or.R R/min0.R R/withPool.R R/round2.R R/mice_imputation_linear_model_main.R R/mice_ml_lmer_define_lmer_function.R R/ma_rmvnorm.R R/mice.impute.2l.contextual.pmm.R R/mice.impute.2l.latentgroupmean.ml.R R/mice.impute.tricube.pmm2.R R/nested.datlist_create.R R/mice.impute.2l.plausible.values.R R/datlist2nested.datlist.R R/ANSI_extend_table.R R/mice_imputation_prepare_2l_functions.R R/lmer_pool2.R R/ma_lme4_formula_terms.R R/replace_values_vector.R R/in_CI.R R/ANSI_create_table_check_variable_values.R R/systime.R R/quantile0.R R/fisher2cor.R R/mice_imputation_pls_estimate_pls_regression.R R/mice.impute.2l.pls2.R R/mice_imputation_new_proposal.R R/List2nestedList.R R/fleishman_coef.R R/syn_mice_completed_datasets.R R/syn.formula.R R/mice.impute.simputation.R R/mice_imputation_imputeR.R R/grepvec_leading.R R/mice_imputation_smcfcs_clean_input.R R/mice_imputation_multilevel_include_2l_predictors.R R/datalist2mids.R R/grep_leading.R R/mice.impute.pmm4.R R/GroupMean_group_indices.R R/ma.wtd.kurtosisNA.R R/cor2fisher.R R/fleishman_sim.R R/mice.impute.smcfcs.R R/mice_ml_lmer_choice_aggregated_variables.R R/require_namespace.R R/mice_ml_lmer_extract_input.R R/summary.lmer_pool.R R/ml_mcmc_initial_values.R R/miceadds_import_CDM_CDM_rmvnorm.R R/syn_mice.R R/max0.R R/lm.cluster.R R/mice.impute.2lonly.norm2.R R/kernelpls.fit2.R R/mice_multilevel_doCall_suppressWarnings.R R/mice_ml_lmer_define_predicted_umat.R R/syn_da.R R/summary.MIwaldtest.R R/mice_multilevel_imputation_draw_random_effects.R R/file_path.R R/mice_imputation_factor_pmm_prepare.R R/ma_wtd_cov_NA_compute_wtd_cov.R R/mice_imputation_multilevel_lmerControl_define_optimizer.R R/micombine.cov.R R/subset_datlist_modify_factor_levels.R R/fast.groupsum.R R/mice_impute_catpmm_add_noise_x.R R/micombine_cov_compute.R R/create.designMatrices.waldtest.R R/mice.impute.synthpop.R R/NMIextract.R R/NMIwaldtest_u2list.R R/library_install.R R/cwc.R R/mice_multilevel_draw_rnorm1.R R/pool_nmi_scalar_helper.R R/summary.NMIwaldtest.R R/scan0.R R/mice_imputation_pls_largest_correlations.R R/mice.impute.norm3.R R/save.Rdata.R R/draw.pv.ctt.R R/plot.mids.1chain.R R/cronbach_alpha.R R/tw.mcmc.imputation.R R/load.Rdata.R R/GroupSD.R R/summary.mipo.nmi.R R/mice.impute.2l.pls.R R/mice.impute.rlm.R R/within.NestedImputationList.R R/ANSI_create_table.R R/lmer_vcov.R R/syn_da_synthesize_lm.R R/output.format1.R R/syn.mice.R R/mice_imputation_weighted_norm_draw.R R/mice.impute.catpmm.R R/mice_imputation_pls_clean_missings.R R/mice_imputation_pls_helper.R R/filename_split.R R/var0.R R/mids2datlist.R R/mice_imputation_pls_include_quadratics.R R/mice_ml_lmer_extend_imputed_values_lower_level.R R/mice_ml_lmer_construct_lme4_formula.R R/mice.impute.2l.contextual.norm.R R/ml_mcmc.R R/write.mice.imputation.R R/mice.impute.2lonly.pmm2.R R/mice_ml_lmer_arrange_cluster_identifiers.R R/pool.mi.R R/rcpp_create_header_file.R R/nesteddatlist2datlist.R R/mice_imputation_create_type_vector.R R/normalize_vector.R R/Rfunction_output_list_result_function.R R/mice.impute.2l.binary.R R/micombine.cor.R R/with.mids.1chain.R R/mice_ml_lmer_draw_random_effects.R R/mice.impute.tricube.pmm.R R/files_move.R R/visitSequence.determine.R R/ANSI_matrix_include_cols.R R/mice_multilevel_create_formula.R R/mice_ml_lmer_include_cluster_means.R R/fast.groupmean.R R/mice_imputation_smcfcs_draw_bootstrap_sample.R R/mice.impute.eap.R R/mi_dstat.R R/mice_multilevel_imputation_pmm5.R R/mice.impute.pmm3.R R/mice_imputation_pls_pca_reduction.R R/extract_response_matrix.R R/mice.impute.ml.lmer.R R/summary.lmer_vcov.R R/ml_mcmc_summary_print_descriptives.R R/GroupMean_extend_data.R R/index.dataframe.R R/mice_imputation_get_states.R R/string_find_last.R R/zzz.R R/mice_imputation_pls_scale_x.R R/plot.ml_mcmc.R R/nnig_sim.R R/mice_imputation_2l_lmer.R R/ml_mcmc_proc_data.R R/write.datlist.R R/plausible.value.imputation.R R/mice_multilevel_impute_groupmean.R R/mice_imputation_weighted_norm_prepare.R R/lm_cluster_compute_vcov.R R/Revalprstr.R R/lmer_vcov2.R R/ma.wtd.meanNA.R R/vector2matrix.R R/prop_miss.R R/NMIcombine.R R/mice_imputation_transformation.R R/Rhat1.R R/ma_colMode.R R/mice_ml_lmer_draw_random_effects_in_iterations.R R/mice_imputation_pls_draw_bootstrap_sample.R R/grep.vec.R R/Reval.R R/syn_mice_create_design_matrix.R R/miceadds_weighted_centering.R R/mice_imputation_extract_parameters_bc.R R/mice_imputation_extract_list_arguments.R R/GroupSum.R R/within.datlist.R R/nested.datlist2datlist.R R/source.Rcpp.all.R R/sd0.R R/ma_colMeans.R R/lmer_extract_sd_random_effects.R R/jomo2datlist.R R/micombine.chisquare.R R/stats0.R R/mice_imputation_bygroup_modify_arguments.R R/mice_impute_catpmm_create_dummies_y.R R/mice.impute.imputeR.cFun.R R/within.nested.datlist.R R/mice.impute.plausible.values.R R/scale_datlist.R R/Revalpr_maxabs.R R/mice_imputation_create_contextual_variables.R R/visitSequence_determine_remove_entry.R R/latent.regression.em.R R/ma_exists_get.R R/NMIwaldtest_compute_statistic.R R/coef.ml_mcmc.R R/datlist2Amelia.R R/with.datlist.R R/ml_mcmc_fit.R R/latent_regression_em_sampling.R R/mice_imputation_pls_correlation_criteria.R R/mice_imputation_pls_include_interactions.R R/within.imputationList.R R/Rhat.mice.R R/mice_multilevel_imputation_draw_residuals.R R/mice_imputation_extract_arguments_list.R R/mice_imputation_add_jitter.R R/mice_imputation_smcfcs_evaluate_loglikelihood.R

src/Makevars.win

src/Makevars

src/miceadds_rcpp_ml_mcmc_sampler.cpp

src/RcppExports.cpp

src/miceadds_rcpp_pmm6.cpp

src/miceadds_rcpp_ml_mcmc_sub.h

src/miceadds_rcpp_create_interactions.cpp

src/miceadds_rcpp_weighted_cor.cpp

src/miceadds_rcpp_scale.cpp

src/miceadds_rcpp_kernelpls_1dim.cpp

src/miceadds_rcpp_weighted_pmm.cpp

src/miceadds_rcpp_ml_mcmc_sub.cpp

inst/NEWS

inst/CITATION

inst/include/miceadds.h

inst/include/miceadds_RcppExports.h

build/partial.rdb

data/datalist

data/data.ma03.rda

data/data.ma06.rda

data/data.ma07.rda

data/data.ma05.rda

data/data.enders.eatingattitudes.rda

data/data.allison.gssexp.rda

data/data.ma01.rda

data/data.internet.rda

data/data.allison.hip.rda

data/data.ma04.rda

data/data.ma09.rda

data/data.ma08.rda

data/data.allison.usnews.rda

data/data.graham.ex6.rda

data/data.enders.depression.rda

data/data.graham.ex8c.rda

data/data.graham.ex8b.rda

data/data.graham.ex3.rda

data/data.largescale.rda

data/data.enders.employee.rda

data/data.smallscale.rda

data/data.ma02.rda

data/data.graham.ex8a.rda

man/ma_lme4_formula_terms.Rd man/miceadds-utilities.Rd man/data.smallscale.Rd man/fleishman_sim.Rd man/GroupMean.Rd man/micombine.F.Rd man/mice.impute.pls.Rd man/NMIwaldtest.Rd man/filename_split.Rd man/pca.covridge.Rd man/scan.vector.Rd man/pool_mi.Rd man/visitSequence.determine.Rd man/write.fwf2.Rd man/micombine.chisquare.Rd man/mice.impute.bygroup.Rd man/library_install.Rd man/ma.wtd.statNA.Rd man/mice.impute.simputation.Rd man/mice.impute.2l.contextual.pmm.Rd man/mice.impute.hotDeck.Rd man/mids2mlwin.Rd man/pool.mids.nmi.Rd man/nestedList2List.Rd man/cxxfunction.copy.Rd man/data.enders.Rd man/grep.vec.Rd man/systime.Rd man/index.dataframe.Rd man/mice.1chain.Rd man/write.pspp.Rd man/kernelpls.fit2.Rd man/micombine.cor.Rd man/mice.impute.plausible.values.Rd man/miceadds-defunct.Rd man/datlist_create.Rd man/files_move.Rd man/load.Rdata.Rd man/syn.formula.Rd man/NestedImputationList.Rd man/ma_rmvnorm.Rd man/mids2datlist.Rd man/draw.pv.ctt.Rd man/data.graham.Rd man/datlist2Amelia.Rd man/tw.imputation.Rd man/mice_imputation_2l_lmer.Rd man/mice.impute.ml.lmer.Rd man/mice.impute.synthpop.Rd man/mice.impute.2l.latentgroupmean.ml.Rd man/ml_mcmc.Rd man/scale_datlist.Rd man/mi.anova.Rd man/stats0.Rd man/mi_dstat.Rd man/data.allison.Rd man/data.ma.Rd man/data.largescale.Rd man/mice.impute.imputeR.lmFun.Rd man/data.internet.Rd man/mice.impute.catpmm.Rd man/subset_datlist.Rd man/mice.impute.constant.Rd man/syn.constant.Rd man/nnig_sim.Rd man/ma.scale2.Rd man/crlrem.Rd man/load.data.Rd man/sumpreserving.rounding.Rd man/jomo2datlist.Rd man/mice.impute.rlm.Rd man/mice.nmi.Rd man/miceadds-package.Rd man/write.mice.imputation.Rd man/complete.miceadds.Rd man/write.datlist.Rd man/mice.impute.weighted.pmm.Rd man/datalist2mids.Rd man/Reval.Rd man/lm.cluster.Rd man/Rhat.mice.Rd man/str_C.expand.grid.Rd man/syn_da.Rd man/Rfunction_include_argument_values.Rd man/mice.impute.2lonly.function.Rd man/save.Rdata.Rd man/VariableNames2String.Rd man/with.miceadds.Rd man/syn.mice.Rd man/mice.impute.tricube.pmm.Rd man/in_CI.Rd man/mice.impute.pmm3.Rd man/syn_mice.Rd man/mice.impute.smcfcs.Rd man/output.format1.Rd man/lmer_vcov.Rd man/mice_inits.Rd man/Rsessinfo.Rd man/save.data.Rd man/round2.Rd man/source.all.Rd

miceadds documentation built on Jan. 7, 2023, 1:09 a.m.