mycobacrvR: Integrative immunoinformatics for Mycobacterial diseases in R platform

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The mycobacrvR package contains utilities to provide detailed information for B cell and T cell epitopes for predicted adhesins from various servers such as ABCpred, Bcepred, Bimas, Propred, NetMHC and IEDB. Please refer the URL below to download data files (data_mycobacrvR.zip) used in functions of this package.

Author
Deepika Kulshreshtha, Rupanjali Chaudhuri, S. Ramachandran
Date of publication
2013-12-26 15:23:38
Maintainer
S. Ramachandran<ramu@igib.in>
License
GPL-2
Version
1.0
URLs

View on CRAN

Man pages

abcpred_nmer
Epitope conservation prediction from ABCpred server...
algpred
Filter Allergic/Non Allergic proteins using output of Algpred
allermatch
Filter Allergic/Non Allergic proteins using output of...
bcepred_nmer
Epitope conservation prediction from Bcepred server...
bimas_nmer
Epitope prediction from Bimas server information
filter.firstlayer
Filter first layer data
iedb_arb_mhcii_nmer
Epitope conservation prediction for MHCII using IEDB-ARB...
iedb_arb_mhci_nmer
Epitope conservation prediction for MHCI using IEDB-ARB...
iedb_consensus_mhcii_nmer
Epitope conservation prediction for MHCII using...
iedb_consensus_mhci_nmer
Epitope conservation prediction for MHCI using IEDB-consensus...
netmhcNN_nmer
Epitope conservation prediction from NetMHC server 3.0 using...
netmhcWT_nmer
Epitope conservation prediction from NetMHC server 3.0 using...
propred_nmer
Epitope conservation prediction from Propred server...

Files in this package

mycobacrvR
mycobacrvR/NAMESPACE
mycobacrvR/R
mycobacrvR/R/propred_nmer.R
mycobacrvR/R/iedb_consensus_mhcii_nmer.R
mycobacrvR/R/bimas_nmer.R
mycobacrvR/R/filter.firstlayer.R
mycobacrvR/R/iedb_arb_mhci_nmer.R
mycobacrvR/R/netmhcWT_nmer.R
mycobacrvR/R/allermatch.R
mycobacrvR/R/iedb_consensus_mhci_nmer.R
mycobacrvR/R/iedb_arb_mhcii_nmer.R
mycobacrvR/R/algpred.R
mycobacrvR/R/abcpred_nmer.R
mycobacrvR/R/bcepred_nmer.R
mycobacrvR/R/zzz.R
mycobacrvR/R/netmhcNN_nmer.R
mycobacrvR/MD5
mycobacrvR/DESCRIPTION
mycobacrvR/man
mycobacrvR/man/abcpred_nmer.Rd
mycobacrvR/man/iedb_consensus_mhcii_nmer.Rd
mycobacrvR/man/bimas_nmer.Rd
mycobacrvR/man/iedb_arb_mhci_nmer.Rd
mycobacrvR/man/allermatch.Rd
mycobacrvR/man/propred_nmer.Rd
mycobacrvR/man/bcepred_nmer.Rd
mycobacrvR/man/algpred.Rd
mycobacrvR/man/iedb_arb_mhcii_nmer.Rd
mycobacrvR/man/netmhcWT_nmer.Rd
mycobacrvR/man/filter.firstlayer.Rd
mycobacrvR/man/netmhcNN_nmer.Rd
mycobacrvR/man/iedb_consensus_mhci_nmer.Rd