netmhcNN_nmer: Epitope conservation prediction from NetMHC server 3.0 using...

In mycobacrvR: Integrative Immunoinformatics for Mycobacterial Diseases in R Platform

Epitope conservation prediction from NetMHC server 3.0 using artificial neural networks (ANNs)

Description

netmhcNN_nmer is a method to conservation of epitopes among orthologs from NetMHC server 3.0 using artificial neural networks (ANNs)

Usage

netmhcNN_nmer(epi_length)

Arguments

epi_length

A character vector of epitope length

Details

This function takes epitope length as input into epi_length object. Input data for this function is present in "/data_mycobacrvR/netmhcNN_out" directory, therefore this directory as working directory before using this function. NetMHC server 3.0 provides epitopes by selecting window size of epitope length such as 8mer, 9mer, 10mer, 11mer. Therefore epi_length should be given as "10mer".

Value

netmhcNN_nmer() will write two files in the working directory. One file contains the information of epitope and the other file contains metadata for epitope showing orthologs of H37Rv

Author(s)

Deepika Kulshreshtha

Examples

## Not run: netmhcNN_nmer("10mer")
##Conservation of 10mer epitopes from NetMHC server

mycobacrvR documentation built on May 13, 2022, 5:06 p.m.