bimas_nmer: Epitope prediction from Bimas server information
In mycobacrvR: Integrative Immunoinformatics for Mycobacterial Diseases in R Platform
bimas_nmer R Documentation
Epitope prediction from Bimas server information
Description
bimas_nmer is a method to predict conservation of epitopes among orthologs from Bimas server data
Usage
bimas_nmer(epi_length)
Arguments
epi_length
A character vector of epitope length
Details
This function takes epitope length as input into epi_length object. Input data for this function is present in "/data_mycobacrvR/bimas_out" directory, therefore set this directory as working directory before using this function. Bimas server provide epitopes by selecting window size of epitope length such as 8, 9 and 10. Therefore epi_length should be given as "10mer".
Value
bimas_nmer() will write two files in the working directory. One file contains the information of epitope and the other file contains metadata for epitope showing orthologs of H37Rv
Author(s)
Deepika Kulshreshtha
Examples
## Not run: bimas_nmer("10mer")
##Conservation of 10mer epitopes from Bimas server
mycobacrvR documentation built on May 13, 2022, 5:06 p.m.
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| bimas_nmer | R Documentation |
Epitope prediction from Bimas server information
Description
bimas_nmer is a method to predict conservation of epitopes among orthologs from Bimas server data
Usage
bimas_nmer(epi_length)
Arguments
epi_length |
A character vector of epitope length |
Details
This function takes epitope length as input into epi_length object. Input data for this function is present in "/data_mycobacrvR/bimas_out" directory, therefore set this directory as working directory before using this function. Bimas server provide epitopes by selecting window size of epitope length such as 8, 9 and 10. Therefore epi_length should be given as "10mer".
Value
bimas_nmer() will write two files in the working directory. One file contains the information of epitope and the other file contains metadata for epitope showing orthologs of H37Rv
Author(s)
Deepika Kulshreshtha
Examples
## Not run: bimas_nmer("10mer")
##Conservation of 10mer epitopes from Bimas server
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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