Epitope conservation prediction for MHCII using IEDB-consensus information
iedb_consensus_mhcii_nmer is a method to predict conservation of epitopes among orthologs for MHCII using IEDB-consensus server data
A character vector for server name
This function takes server name "IEDB_consensusMHCII" as input into clas object.Input data for this function is present in "/data_mycobacrvR/iedb_consensus_mhcii_out" directory, therefore set working directory to "~/data_mycobacrvR/iedb_consensus_mhcii_out/" before using this function. IEDB-consensus provides epitopes of different length.
iedb_consensus_mhcii_nmer() will write two files in the working directory. One file contains the information of epitope and the other file contains metadata for epitope showing orthologs of H37Rv
## Not run: iedb_consensus_mhcii_nmer("IEDB_consensusMHCII") ##Conservation of all epitopes from IEDB server
Want to suggest features or report bugs for rdrr.io? Use the GitHub issue tracker.