Epitope conservation prediction for MHCII using IEDB-consensus information

Description

iedb_consensus_mhcii_nmer is a method to predict conservation of epitopes among orthologs for MHCII using IEDB-consensus server data

Usage

1

Arguments

clas

A character vector for server name

Details

This function takes server name "IEDB_consensusMHCII" as input into clas object.Input data for this function is present in "/data_mycobacrvR/iedb_consensus_mhcii_out" directory, therefore set working directory to "~/data_mycobacrvR/iedb_consensus_mhcii_out/" before using this function. IEDB-consensus provides epitopes of different length.

Value

iedb_consensus_mhcii_nmer() will write two files in the working directory. One file contains the information of epitope and the other file contains metadata for epitope showing orthologs of H37Rv

Author(s)

Deepika Kulshreshtha

Examples

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## Not run: iedb_consensus_mhcii_nmer("IEDB_consensusMHCII")
##Conservation of all epitopes from IEDB server

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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