iedb_consensus_mhcii_nmer: Epitope conservation prediction for MHCII using...
In mycobacrvR: Integrative Immunoinformatics for Mycobacterial Diseases in R Platform
iedb_consensus_mhcii_nmer R Documentation
Epitope conservation prediction for MHCII using IEDB-consensus information
Description
iedb_consensus_mhcii_nmer is a method to predict conservation of epitopes among orthologs for MHCII using IEDB-consensus server data
Usage
iedb_consensus_mhcii_nmer(clas)
Arguments
clas
A character vector for server name
Details
This function takes server name "IEDB_consensusMHCII" as input into clas object.Input data for this function is present in "/data_mycobacrvR/iedb_consensus_mhcii_out" directory, therefore set working directory to "~/data_mycobacrvR/iedb_consensus_mhcii_out/" before using this function. IEDB-consensus provides epitopes of different length.
Value
iedb_consensus_mhcii_nmer() will write two files in the working directory. One file contains the information of epitope and the other file contains metadata for epitope showing orthologs of H37Rv
Author(s)
Deepika Kulshreshtha
Examples
## Not run: iedb_consensus_mhcii_nmer("IEDB_consensus_mhcii")
##Conservation of all epitopes from IEDB server
mycobacrvR documentation built on May 13, 2022, 5:06 p.m.
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| iedb_consensus_mhcii_nmer | R Documentation |
Epitope conservation prediction for MHCII using IEDB-consensus information
Description
iedb_consensus_mhcii_nmer is a method to predict conservation of epitopes among orthologs for MHCII using IEDB-consensus server data
Usage
iedb_consensus_mhcii_nmer(clas)
Arguments
clas |
A character vector for server name |
Details
This function takes server name "IEDB_consensusMHCII" as input into clas object.Input data for this function is present in "/data_mycobacrvR/iedb_consensus_mhcii_out" directory, therefore set working directory to "~/data_mycobacrvR/iedb_consensus_mhcii_out/" before using this function. IEDB-consensus provides epitopes of different length.
Value
iedb_consensus_mhcii_nmer() will write two files in the working directory. One file contains the information of epitope and the other file contains metadata for epitope showing orthologs of H37Rv
Author(s)
Deepika Kulshreshtha
Examples
## Not run: iedb_consensus_mhcii_nmer("IEDB_consensus_mhcii")
##Conservation of all epitopes from IEDB server
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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