algpred: Filter Allergic/Non Allergic proteins using output of Algpred

In mycobacrvR: Integrative Immunoinformatics for Mycobacterial Diseases in R Platform

Filter Allergic/Non Allergic proteins using output of Algpred

Description

algpred is a function to filter allergic and non allergic proteins of an organism using output of Algpred

Usage

algpred(data, organism, ginumber, prediction)

Arguments

data	A character string specifying filenamme containing tabular output from Algpred
organism	A character vector specifying name of species present in "organism.txt"
ginumber	A numeric vector specifying ginumber of protein for a species for which allergic preperty is to be predicted
prediction	A character vector specifying "Allergen" or "Non Allergen"

Details

This function takes tabular output of Algpred in data as input.Input data (Final_algpred.txt) for this function is present in "/data_mycobacrvR/" directory, therefore set working directory to "~/data_mycobacrvR/" before using this function. algpred() filters data using arguments organism, ginumber and prediction. Defalult value for ginumber is "ALL" and for prediction is "Non Allergen". Organism can be provided by selecting organisms from "organism.txt" file present in working directory

Value

A file of filtered proteins named "filtered_algpred.txt" using the given arguments.

Author(s)

Deepika Kulshreshtha

See Also

allermatch

Examples

## Not run: algpred("Final_algpred.txt",organism="Mycobacterium avium 104")

mycobacrvR documentation built on May 13, 2022, 5:06 p.m.