propred_nmer: Epitope conservation prediction from Propred server...
In mycobacrvR: Integrative Immunoinformatics for Mycobacterial Diseases in R Platform
propred_nmer R Documentation
Epitope conservation prediction from Propred server information
Description
propred_nmer is a method to conservation of epitopes among orthologs from Propred server data
Usage
propred_nmer(epi_length)
Arguments
epi_length
A character vector of epitope length
Details
This function takes epitope length as input into epi_length object. Input data for this function is present in "/data_mycobacrvR/propred_out" directory, therefore set this directory as working directory before using this function. Propred server provide epitopes of epitope length 9. Therefore epi_length should be given as "9mer".
Value
propred_nmer() will write two files in the working directory. One file contains the information of epitope and the other file contains metadata for epitope showing orthologs of H37Rv
Author(s)
Deepika Kulshreshtha
Examples
## Not run: propred_nmer("9mer")
##Conservation of all 9mer epitopes from Propred server
mycobacrvR documentation built on May 13, 2022, 5:06 p.m.
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| propred_nmer | R Documentation |
Epitope conservation prediction from Propred server information
Description
propred_nmer is a method to conservation of epitopes among orthologs from Propred server data
Usage
propred_nmer(epi_length)
Arguments
epi_length |
A character vector of epitope length |
Details
This function takes epitope length as input into epi_length object. Input data for this function is present in "/data_mycobacrvR/propred_out" directory, therefore set this directory as working directory before using this function. Propred server provide epitopes of epitope length 9. Therefore epi_length should be given as "9mer".
Value
propred_nmer() will write two files in the working directory. One file contains the information of epitope and the other file contains metadata for epitope showing orthologs of H37Rv
Author(s)
Deepika Kulshreshtha
Examples
## Not run: propred_nmer("9mer")
##Conservation of all 9mer epitopes from Propred server
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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