Man pages for nat.nblast
NeuroAnatomy Toolbox ('nat') Extension for Assessing Neuron Similarity and Clustering
| calc_dists_dotprods | Calculate distances and dot products between two sets of... |
| calc_prob_mat | Calculate probability matrix from distances and dot products... |
| calc_score_matrix | Calculate scoring matrix from probability matrices for... |
| create_scoringmatrix | Create a scoring matrix given matching and non-matching sets... |
| diagonal | Extract diagonal terms from a variety of matrix types |
| extract-methods | Extract parts of a sparse 'spam' matrix |
| fctraces20 | 20 traced Drosophila neurons from Chiang et al 2011 |
| fill_in_sparse_score_mat | Add one or more submatrices to a sparse score matrix |
| fill_pairs_sparse_score_mat | Add forwards, reverse and self scores for a pair of neurons... |
| nat.nblast-package | Neuron similarity, search and clustering tools |
| nblast | Calculate similarity score for neuron morphologies |
| nblast_allbyall | Wrapper function to compute all by all NBLAST scores for a... |
| NeuriteBlast | Produce similarity score for neuron morphologies |
| neuron_pairs | Utility function to generate all or random pairs of neurons |
| nhclust | Cluster a set of neurons |
| plot3d.hclust | Methods to identify and plot groups of neurons cut from an... |
| show_similarity | Display two neurons with segments in the query coloured by... |
| smat.fcwb | Scoring matrices for neuron similarities in FCWB template... |
| sparse_score_mat | Convert a subset of a square score matrix to a sparse... |
| sub_dist_mat | Convert (a subset of) a raw score matrix to a distance matrix |
| sub_score_mat | Return scores (or distances) for given query and target... |
| subset.hclust | Return the labels of items in 1 or more groups cut from... |
| WeightedNNBasedLinesetMatching | Compute point & tangent vector similarity score between two... |
