NeuroAnatomy Toolbox ('nat') Extension for Assessing Neuron Similarity and Clustering

calc_dists_dotprods | Calculate distances and dot products between two sets of... |

calc_prob_mat | Calculate probability matrix from distances and dot products... |

calc_score_matrix | Calculate scoring matrix from probability matrices for... |

create_scoringmatrix | Create a scoring matrix given matching and non-matching sets... |

diagonal | Extract diagonal terms from a variety of matrix types |

extract-methods | Extract parts of a sparse 'spam' matrix |

fctraces20 | 20 traced Drosophila neurons from Chiang et al 2011 |

fill_in_sparse_score_mat | Add one or more submatrices to a sparse score matrix |

fill_pairs_sparse_score_mat | Add forwards, reverse and self scores for a pair of neurons... |

nat.nblast-package | Neuron similarity, search and clustering tools |

nblast | Calculate similarity score for neuron morphologies |

nblast_allbyall | Wrapper function to compute all by all NBLAST scores for a... |

NeuriteBlast | Produce similarity score for neuron morphologies |

neuron_pairs | Utility function to generate all or random pairs of neurons |

nhclust | Cluster a set of neurons |

plot3d.hclust | Methods to identify and plot groups of neurons cut from an... |

show_similarity | Display two neurons with segments in the query coloured by... |

smat.fcwb | Scoring matrices for neuron similarities in FCWB template... |

sparse_score_mat | Convert a subset of a square score matrix to a sparse... |

sub_dist_mat | Convert (a subset of) a raw score matrix to a distance matrix |

sub_score_mat | Return scores (or distances) for given query and target... |

subset.hclust | Return the labels of items in 1 or more groups cut from... |

WeightedNNBasedLinesetMatching | Compute point & tangent vector similarity score between two... |

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