Man pages for nat.nblast
NeuroAnatomy Toolbox ('nat') Extension for Assessing Neuron Similarity and Clustering

calc_dists_dotprodsCalculate distances and dot products between two sets of...
calc_prob_matCalculate probability matrix from distances and dot products...
calc_score_matrixCalculate scoring matrix from probability matrices for...
create_scoringmatrixCreate a scoring matrix given matching and non-matching sets...
diagonalExtract diagonal terms from a variety of matrix types
extract-methodsExtract parts of a sparse 'spam' matrix
fctraces2020 traced Drosophila neurons from Chiang et al 2011
fill_in_sparse_score_matAdd one or more submatrices to a sparse score matrix
fill_pairs_sparse_score_matAdd forwards, reverse and self scores for a pair of neurons...
nat.nblast-packageNeuron similarity, search and clustering tools
nblastCalculate similarity score for neuron morphologies
nblast_allbyallWrapper function to compute all by all NBLAST scores for a...
NeuriteBlastProduce similarity score for neuron morphologies
neuron_pairsUtility function to generate all or random pairs of neurons
nhclustCluster a set of neurons
plot3d.hclustMethods to identify and plot groups of neurons cut from an...
show_similarityDisplay two neurons with segments in the query coloured by...
smat.fcwbScoring matrices for neuron similarities in FCWB template...
sparse_score_matConvert a subset of a square score matrix to a sparse...
sub_dist_matConvert (a subset of) a raw score matrix to a distance matrix
sub_score_matReturn scores (or distances) for given query and target...
subset.hclustReturn the labels of items in 1 or more groups cut from...
WeightedNNBasedLinesetMatchingCompute point & tangent vector similarity score between two...
nat.nblast documentation built on Jan. 23, 2020, 5:06 p.m.