Return scores (or distances) for given query and target neurons
Scores can either be returned as raw numbers, normalised such that a self-hit
has score 1, or as the average of the normalised scores in both the forwards
& reverse directions (i.e.
|query->target| + |target->query| / 2).
Distances are returned as either
1 - normscore in the forwards
direction, or as
1 - normscorebar, where
normscore averaged across both directions.
character vectors of neuron identifiers.
a matrix, ff matrix, bigmatrix or a character vector specifiying the name of an ff matrix containing the all by all score matrix.
logical indicating whether to return distances or scores.
the type of normalisation procedure that should be
carried out, selected from
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