calc_score_matrix: Calculate scoring matrix from probability matrices for...
In nat.nblast: NeuroAnatomy Toolbox ('nat') Extension for Assessing Neuron Similarity and Clustering
calc_score_matrix R Documentation
Calculate scoring matrix from probability matrices for matching and
non-matching sets of neurons
Description
Calculate scoring matrix from probability matrices for matching and
non-matching sets of neurons
Usage
calc_score_matrix(matchmat, randmat, logbase = 2, epsilon = 1e-06)
Arguments
matchmat
a probability matrix given by considering 'matching' neurons.
randmat
a probability matrix given by considering 'non-matching' or
'random' neurons.
logbase
the base to which the logarithm should be taken to produce the
final scores.
epsilon
a pseudocount to prevent division by zero when constructing
the log odds ratio in the probability matrix.
Value
A matrix with with class=c("scoringmatrix", "table"), with
columns as specified by dotprodbreaks and rows as specified by
distbreaks, containing scores for neuron segments with the given
distance and dot product.
nat.nblast documentation built on Aug. 18, 2025, 5:25 p.m.
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| calc_score_matrix | R Documentation |
Calculate scoring matrix from probability matrices for matching and non-matching sets of neurons
Description
Calculate scoring matrix from probability matrices for matching and non-matching sets of neurons
Usage
calc_score_matrix(matchmat, randmat, logbase = 2, epsilon = 1e-06)
Arguments
matchmat |
a probability matrix given by considering 'matching' neurons. |
randmat |
a probability matrix given by considering 'non-matching' or 'random' neurons. |
logbase |
the base to which the logarithm should be taken to produce the final scores. |
epsilon |
a pseudocount to prevent division by zero when constructing the log odds ratio in the probability matrix. |
Value
A matrix with with class=c("scoringmatrix", "table"), with
columns as specified by dotprodbreaks and rows as specified by
distbreaks, containing scores for neuron segments with the given
distance and dot product.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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