calc_prob_mat: Calculate probability matrix from distances and dot products...

In nat.nblast: NeuroAnatomy Toolbox ('nat') Extension for Assessing Neuron Similarity and Clustering

Calculate probability matrix from distances and dot products between neuron segments

Description

Calculate probability matrix from distances and dot products between neuron segments

Usage

calc_prob_mat(
  nndists,
  dotprods,
  distbreaks,
  dotprodbreaks = seq(0, 1, by = 0.1),
  ReturnCounts = FALSE
)

Arguments

nndists	a list of nearest-neighbour distances or a list of both nearest-neighbour distances and dot products.
dotprods	a list of dot products.
distbreaks	a vector specifying the breaks for distances in the probability matrix.
dotprodbreaks	a vector specifying the breaks for dot products in the probability matrix.
ReturnCounts	a Boolean indicating that counts should be returned instead of the default probabilities.

Value

A matrix with columns as specified by dotprodbreaks and rows as specified by distbreaks, containing probabilities (for default value of ReturnCounts=TRUE) or counts (if ReturnCounts=TRUE) for finding neuron segments with the given distance and dot product.

nat.nblast documentation built on July 9, 2023, 6:12 p.m.