fill_pairs_sparse_score_mat: Add forwards, reverse and self scores for a pair of neurons...

In nat.nblast: NeuroAnatomy Toolbox ('nat') Extension for Assessing Neuron Similarity and Clustering

Add forwards, reverse and self scores for a pair of neurons to a sparse score matrix

Description

Add forwards, reverse and self scores for a pair of neurons to a sparse score matrix

Usage

fill_pairs_sparse_score_mat(
  sparse_matrix,
  n1,
  n2,
  dense_matrix,
  reverse = TRUE,
  self = TRUE,
  reverse_self = (reverse && self)
)

Arguments

sparse_matrix	the sparse matrix to fill in.
n1	the name of the query neuron.
n2	the name of the target neuron.
dense_matrix	the score matrix from which to extract scores.
reverse	logical indicating that the reverse score should also be filled in (default TRUE).
self	logical indicating that the self-score of the query should also be filled in (used for normalised scores; default TRUE).
reverse_self	logical indicating that the self-score of the target should also be filled in (used for mean scores; default TRUE).

Value

A sparse matrix (of class spam) with the specified score entries filled.

nat.nblast documentation built on July 9, 2023, 6:12 p.m.