nlmixrWithTiming: Time a part of a nlmixr operation and add to nlmixr object

In nlmixr2est: Nonlinear Mixed Effects Models in Population PK/PD, Estimation Routines

Time a part of a nlmixr operation and add to nlmixr object

Description

Time a part of a nlmixr operation and add to nlmixr object

Usage

nlmixrWithTiming(name, code, envir = NULL)

Arguments

name	Name of the timing to be integrated
code	Code to be evaluated and timed
envir	can be either the nlmixr2 fit data, the nlmixr2 fit environment or NULL, which implies it is going to be added to the nlmixr fit when it is finalized. If the function is being called after a fit is created, please supply this environmental variable

Value

Result of code

Author(s)

Matthew L. Fidler

Examples

one.cmt <- function() {
 ini({
   ## You may label each parameter with a comment
   tka <- 0.45 # Ka
   tcl <- log(c(0, 2.7, 100)) # Log Cl
   ## This works with interactive models
   ## You may also label the preceding line with label("label text")
   tv <- 3.45; label("log V")
   ## the label("Label name") works with all models
   eta.ka ~ 0.6
   eta.cl ~ 0.3
   eta.v ~ 0.1
   add.sd <- 0.7
 })
 model({
   ka <- exp(tka + eta.ka)
   cl <- exp(tcl + eta.cl)
   v <- exp(tv + eta.v)
   linCmt() ~ add(add.sd)
 })
}
fit <- nlmixr(one.cmt, theo_sd, est="saem")

nlmixrWithTiming("time1", {
   Sys.sleep(1)
   # note this can be nested, time1 will exclude the timing from time2
   nlmixrWithTiming("time2", {
      Sys.sleep(1)
   }, envir=fit)
}, envir=fit)

print(fit)

nlmixr2est documentation built on Oct. 8, 2023, 9:06 a.m.