API for nlmixr2est
Nonlinear Mixed Effects Models in Population PK/PD, Estimation Routines

Global functions
.DollarNames.nlmixr2FitCore Source code
.DollarNames.nlmixr2FitData Source code
.aaaPostEstimationMixBacktransform Source code
.absorbIterPrintControl Man page Source code
.addBackInterestingMuEtas Source code
.addFoceiInfoToFit Source code
.addLevels Source code
.addPkgNlmixr2 Man page
.adviClassifyPars Source code
.adviDataPrep Source code
.adviFitModel Source code
.adviInnerEval Source code
.adviInnerFoceiControl Source code
.adviInnerFree Source code
.adviInnerSetup Source code
.adviInstallThetaCov Source code
.adviInstallVarCov Source code
.adviOptimize Source code
.adviToFit Source code
.agq Man page Source code
.agqControlToFoceiControl Source code
.augPredExpandData Source code
.augPredIpredModel Man page Source code
.backTransformParHist Source code
.backTransformParHistMix Source code
.bobyqa Source code
.bobyqaControlToFoceiControl Source code
.bobyqaFamilyControl Source code
.bobyqaFitModel Source code
.bobyqaNLopt Source code
.bobyqaRetryIfStuck Source code
.boundedResidOpt Source code
.boundedTransformCovJacobian Source code
.boundedTransformDeriv Source code
.buildTransformExpr Source code
.calcCwres Source code
.calcCwres0 Source code
.calcIres Source code
.calcNpde Source code
.calcRes Source code
.calcShrinkOnly Source code
.calcTables Source code
.captureOutput Source code
.cloneEnv Source code
.coefPar Source code
.collectWarn Man page Source code
.configsaem Source code
.controlIterMax Source code
.controlMaxfun Source code
.controlMaxit Source code
.corFromCov Source code
.cov2cor Source code
.covAnalyticScope Source code
.covAnalyticThetaNames Source code
.covBaseName Source code
.covCacheAdd Source code
.covCacheDrop Source code
.covCacheGet Source code
.covEngineControl Source code
.covFdType Source code
.covFullName Source code
.covGetDeferred Source code
.covInstallResult Source code
.covIsFull Source code
.covIsName Source code
.covOptionsDefault Source code
.covOptionsMatch Source code
.covOptionsRecordEstimation Source code
.covOptionsRecorded Source code
.covOptionsRequested Source code
.covOptionsResolve Source code
.covOptionsSet Source code
.covPinnedRefitArgs Source code
.covRecompute Source code
.covRecomputeImp Source code
.covRecomputeNative Source code
.covRecomputeSa Source code
.covSameName Source code
.covToReportedScale Source code
.createEstObject Source code
.createFoceiLineObject Source code
.createMuRefPkBlock Source code
.createSaemLineObject Source code
.dataMergeStub Source code
.deparseDifferent Man page Source code
.deparseFinal Man page Source code
.deparseShared Source code
.deserializeRaw Source code
.downgradeEtas Man page Source code
.enQuote Source code
.expandSimModelAddTad Source code
.extractEtas Source code
.extractEtasOutsideMix Source code
.fillNoObsPred Source code
.filterSyntheticIovMuWarnings Source code
.finalizeOverallTiming Source code
.findMixCalls Source code
.fixCensRNuLine Source code
.fixNames Source code
.fmt3 Source code
.foControlToFoceiControl Source code
.foUnbounded Source code
.foceControlToFoceiControl Source code
.foceiAnalyticAssembleR Source code
.foceiAnalyticAssembleRFR Source code
.foceiAnalyticDirections Source code
.foceiAnalyticDvSensLambda Source code
.foceiAnalyticDvSensLambda2 Source code
.foceiAnalyticErrFull Source code
.foceiAnalyticErrWarn Source code
.foceiAnalyticFallback Source code
.foceiAnalyticJacLambda Source code
.foceiAnalyticSolveTol Source code
.foceiAnalyticSubjectGrad Source code
.foceiAnalyticSubjectGradAgqFR Source code
.foceiAnalyticSubjectGradFR Source code
.foceiAnalyticSubjectGradFRCpp Source code
.foceiAnalyticSubjectGradFoce Source code
.foceiAnalyticSubjectGradFoceFR Source code
.foceiAnalyticSubjectGradFoceFRCpp Source code
.foceiAnalyticTbsY Source code
.foceiAssertHessianMethod Source code
.foceiCalcRanalytic Source code
.foceiCholSECovActive Source code
.foceiCovCondition Source code
.foceiEtaOccurrence Source code
.foceiEtaThetaMap Source code
.foceiFamilyControlAs Source code
.foceiFastCtl Source code
.foceiFastMuAttr Source code
.foceiFdFullParams Source code
.foceiFullCtl Source code
.foceiGradPooledSetup Source code
.foceiInstallAnalyticCov Source code
.foceiInstallFdFullCov Source code
.foceiInstallMuCov Source code
.foceiLikControl Source code
.foceiLinCmtCarryCacheFile Source code
.foceiLinCmtCarryCacheRead Source code
.foceiLinCmtCarryCacheWrite Source code
.foceiLinCmtCarryMemoClear Source code
.foceiLinCmtCarryMemoGet Source code
.foceiLinCmtCarryMemoPut Source code
.foceiLinCmtCarryMemoStats Source code
.foceiLinCmtCarryPairs Source code
.foceiNameOccurrence Source code
.foceiObjfWithoutCwres Source code
.foceiOmegaCovNames Source code
.foceiOmegaPairs Source code
.foceiOuterFdForFlagged Source code
.foceiPreProcessData Man page
.foceiPredIpredList Source code
.foceiRecomputeBaseEst Source code
.foceiRecomputeMuCov Source code
.foceiSolvePars Source code
.foceiSolveWithId Source code
.focepControlToFoceiControl Source code
.foiControlToFoceiControl Source code
.genAgq Source code
.getBackTransformationFunction Source code
.getBoundedParams Source code
.getControlFromDots Source code
.getCorPrint Source code
.getMixFromLog Source code
.getMixJacFromLog Source code
.getMuValForUE Source code
.getNewData Source code
.getParfn Source code
.getPureMuRef Source code
.getR Source code
.getRelevantLhs Source code
.getRxArNormOption Source code
.getRxPredLlikOption Source code
.getSaemOmega Source code
.getSaemTheta Source code
.getSimModel Source code
.getSyntheticIovEtaNames Source code
.getUiFunFromIniAndModel Source code
.getZeroEtasFromModel Source code
.h2 Source code
.hasRxSens Source code
.iagqControlToFoceiControl Source code
.ifoceControlToFoceiControl Source code
.ifoceiControlToFoceiControl Source code
.ifocepControlToFoceiControl Source code
.ilaplaceControlToFoceiControl Source code
.impGpdFit Source code
.impPsisK Source code
.impPsisKAll Source code
.impRestoreCovMethod Source code
.impmapAssertProposal Source code
.impmapChainRule Source code
.impmapControlToFoceiControl Source code
.impmapEstTheta Source code
.impmapEstWins Source code
.impmapFamilyControl Source code
.impmapFamilyFit Source code
.impmapGammaRunInfo Source code
.impmapNameCov Source code
.impmapRecomputeObjf Source code
.impmapResolveGammaMethod Source code
.impmapThetaSensModel Source code
.iniIsFixed Source code
.iniLbfgsb3c Source code
.iniLotriPtr Source code
.iniN1qn1ptr Source code
.iniPtrs Source code
.iniRcppTrustPtr Source code
.iniRxode2Ptr Source code
.iniS3 Man page Source code
.iovNativeDecline Source code
.isCurEvalEncodedFunction Source code
.isIovMethod Source code
.isIovSameMethod Source code
.isMuMethod Source code
.isSyntheticIovMuWarning Source code
.isUnboundedMethod Source code
.iterPrintXParFromUi Source code
.laplaceControlToFoceiControl Source code
.lbfgsb3c Source code
.lbfgsb3cControlToFoceiControl Source code
.lbfgsb3cFamilyControl Source code
.lbfgsb3cFitModel Source code
.lbfgsbLG Source code
.lbfgsbO Source code
.legacyQsFn Source code
.linCmtOdeRestoreStateOrder Source code
.loadSymengine Man page
.logspaceAdd Source code
.magqControlToFoceiControl Source code
.mfoceControlToFoceiControl Source code
.mfoceiControlToFoceiControl Source code
.mfocepControlToFoceiControl Source code
.mixCovAppendBlock Source code
.mixCovToProbScale Source code
.mixEnvPieces Source code
.mixFix Source code
.mixInstallProbScaleCov Source code
.mixParFixedCi Source code
.mixProbCovBlock Source code
.mixProbJacobian Source code
.mixRefreshSeFromCov Source code
.mixWarnBoundary Source code
.mlaplaceControlToFoceiControl Source code
.muRefClassify Source code
.muRefCppCovData Source code
.muRefCppGroupSetup Source code
.muRefDefFix Source code
.muRefFit Source code
.muRefGroups Source code
.muRefIrls Source code
.muRefLin Source code
.n1qn1ControlToFoceiControl Source code
.n1qn1FamilyControl Source code
.n1qn1FitModel Source code
.nHessianQN Source code
.nTrustInner Source code
.nTrustOuter Source code
.newuoa Source code
.newuoaControlToFoceiControl Source code
.newuoaFamilyControl Source code
.newuoaFitModel Source code
.nlmAdjustCov Man page Source code
.nlmFamilyAdjustOutput Man page Source code
.nlmFamilyControl Source code
.nlmFamilyControlGeneric Man page Source code
.nlmFamilyFitGeneric Man page Source code
.nlmFinalizeList Man page Source code
.nlmFitDataSetup Source code
.nlmFitModel Source code
.nlmFreeEnv Man page Source code
.nlmGetFRLines Source code
.nlmPrune Source code
.nlmSetupEnv Man page Source code
.nlmeFamilyControl Source code
.nlmeFitDataSetup Source code
.nlmeFitModel Source code
.nlmeGetNonMuRefNames Man page
.nlminb Source code
.nlminbFamilyControl Source code
.nlminbFitModel Source code
.nlmixr0preProcessCovariatesPresent Man page Source code
.nlmixr0preProcessNpMuExpand Man page
.nlmixr2AssertNoPriorsFallback Source code
.nlmixr2AssertPriors Source code
.nlmixr2AssertThetaOnlyPriors Source code
.nlmixr2BenchmarkDefaultCases Source code
.nlmixr2BenchmarkExtractFit Source code
.nlmixr2BenchmarkFit Source code
.nlmixr2BenchmarkNormalizeTime Source code
.nlmixr2BenchmarkOneCompartment Source code
.nlmixr2BenchmarkOneCompartmentLag Source code
.nlmixr2BenchmarkReplicate Source code
.nlmixr2BenchmarkRun Source code
.nlmixr2BenchmarkRxThreads Source code
.nlmixr2BenchmarkSetRxThreads Source code
.nlmixr2BenchmarkSummarize Source code
.nlmixr2BuildPriorSpec Source code
.nlmixr2CholPartial Source code
.nlmixr2CovConditionUpdate Source code
.nlmixr2EstTypeApply Source code
.nlmixr2EstTypeLines Source code
.nlmixr2EstTypePrint Source code
.nlmixr2EstTypeTagged Source code
.nlmixr2FitUpdateParams Man page
.nlmixr2Md5 Source code
.nlmixr2PriorGateBypass Source code
.nlmixr2PriorMethod Source code
.nlmixr2PriorSupport Source code
.nlmixr2RobustCov Source code
.nlmixr2RunEstInterceptors Source code
.nlmixr2RxAssert Source code
.nlmixr2TidyFixed Source code
.nlmixr2TidyRandom Source code
.nlmixr2TidyRandomPar Source code
.nlmixr2clearPipe Source code
.nlmixr2estFoceiPtrs Man page Source code
.nlmixr2estLastPredSimulationInfo Man page Source code
.nlmixr2estLikContribPtrs Man page Source code
.nlmixr2estNlmPtrs Man page Source code
.nlmixr2estRxode2 Source code
.nlmixr2estbuild Source code
.nlmixr2globalReset Source code
.nlmixr2inferEst Source code
.nlmixr2iov Source code
.nlmixr2savePipe Source code
.nlmixrDataHasCens Source code
.nlmixrEstUpdatesOrigModel Source code
.nlmixrFinalizeTiming Source code
.nlmixrFinalizeTimingConstructTable Source code
.nlmixrGetIpredParams Source code
.nlmixrMergeTimeWithExtraTime Source code
.nlmixrNlmFunC Man page Source code
.nlmixrNlmeFun Man page Source code
.nlmixrNlminbFunC Man page Source code
.nlmixrNlminbGradC Man page Source code
.nlmixrNlminbHessC Man page Source code
.nlmixrNlsData Man page Source code
.nlmixrNlsFun Man page Source code
.nlmixrNlsFunGrad Man page Source code
.nlmixrNlsFunVal Man page Source code
.nlmixrNlsFunValGrad Man page Source code
.nlmixrOptimFunC Man page Source code
.nlmixrOptimGradC Man page Source code
.nlmixrPopTimingStack Source code
.nlmixrPreprocessLiteralFix Man page Source code
.nlmixrPushTimingStack Source code
.nlmixrRmMuRefTimeVarying Source code
.nlmixrSetMuRefTimeVarying Source code
.nlmixrTimeVaryingCovariates Source code
.nloptr Source code
.nlsFamilyControl Source code
.nmDropNonEtaCols Source code
.nmObjGetDataSupportedDollars Source code
.nmObjGetSupportedDollars Source code
.nmUpcaseNonCov Source code
.noRandomEffectMsg Source code
.notesFit Source code
.npAssertBuilt Source code
.npAssertCores Source code
.npAssertDfScan Source code
.npAssertImpCtl Source code
.npAutoPoints Source code
.npCallNames Source code
.npEstCore Source code
.npEtaBox Source code
.npFamilyFit Source code
.npImpDefaults Source code
.npInnerFoceiControl Source code
.npInnerFree Source code
.npInnerPsi Source code
.npInnerSetup Source code
.npIsGeneralLik Source code
.npMuAttr Source code
.npResidEndpointIdx Source code
.npSafeLogDomain Source code
.npSubstThetaAddEta Source code
.npValidCtl Source code
.odeSwapInfo Source code
.odeSwapLhsMismatchN Source code
.odeSwapParLayoutFor Source code
.odeSwapPlanFor Source code
.odeSwapRetryTest Source code
.omegaBlockFromIniDf Source code
.omegaBlockIds Source code
.omegaBlockZeroNames Source code
.omegaBlockZeros Source code
.omegaBlocks Source code
.omegaFillBlockZeros Source code
.omegaFitMat Source code
.omegaFixed Source code
.omegaHasOffDiag Source code
.omegaVarCovDeriv Source code
.omegaWriteIni Source code
.onAttach Source code
.onLoad Source code
.optExprCores Source code
.optimFamilyControl Source code
.optimFitModel Source code
.optimize Source code
.orderPreProcessHookNames Source code
.pagedPrint Source code
.pkgInfo Source code
.popNlmixr2Timing Source code
.postEstimationBoundedTransform Source code
.postEstimationBoundedTransformJacobian Source code
.postEstimationBoundedTransformThetaDf Source code
.postEstimationBoundedTransformUi Source code
.postFinalObjectHooksRun Source code
.posthocControlToFoceiControl Source code
.preFinalParTableHooksRun Source code
.preProcessBoundedTransform Source code
.preProcessCensDistWarn Source code
.preProcessDataUi Man page Source code
.preProcessHooksRun Source code
.preProcessLinCmtOde Man page
.preProcessSaemModeledResid Source code
.preProcessVaeNonMuTheta Man page Source code
.preProcessZeroOmega Man page Source code
.preProcessZeroTheta Man page Source code
.pushNlmixr2timing Source code
.rbindParHistory Source code
.rebuildRxUiFromLstExpr Source code
.reinsertNoObsSubjects Source code
.reorderCols Source code
.replaceTaint Source code
.resetCacheIfNeeded Source code
.residAdjustIpredNames Source code
.residOdeFallbackMethods Source code
.rewriteModelWithTransforms Source code
.rstudioComplete Source code
.rxCarryCallShape Source code
.rxCarryFactorPred Source code
.rxCarryFindLinCmtB Source code
.rxCarryThetaDetect Source code
.rxCarryThetaEligible Source code
.rxCarryThetaEmit Source code
.rxCarryThetaModelOk Source code
.rxCarryThetaName Source code
.rxCarryThetaPairsForBuild Source code
.rxControlScaleSigdig Source code
.rxFinalizeNlm Source code
.rxFoceiCarryCmtValues Source code
.rxFoceiCarryCovVaries Source code
.rxFoceiCarryDoseCmtOk Source code
.rxFoceiCarryDoseRows Source code
.rxFoceiCarryEligibleEta Source code
.rxFoceiCarryEmpty Source code
.rxFoceiCarryEtaIdOnly Source code
.rxFoceiCarryEtaJump Source code
.rxFoceiCarryEtaSlotInfo Source code
.rxFoceiCarryEventMods Source code
.rxFoceiCarryFindLinCmtB Source code
.rxFoceiCarryFreeSyms Source code
.rxFoceiCarryHasInfusion Source code
.rxFoceiCarryIsZero Source code
.rxFoceiCarryJumpDataProblem Source code
.rxFoceiCarryKernelHasCov Source code
.rxFoceiCarryMicro Source code
.rxFoceiCarryPairRow Source code
.rxFoceiCarryPredArgs Source code
.rxFoceiCarryPredCall Source code
.rxFoceiCarryRhsTxt Source code
.rxFoceiCarryShape Source code
.rxFoceiCarrySubsSlots Source code
.rxFoceiCarryTxt Source code
.rxFoceiCarryVarying Source code
.rxFoceiCarryVc Source code
.rxFoceiCarryWhy Source code
.rxFoceiLinCmtCarryBuildEnabled Source code
.rxFoceiLinCmtCarryCall Source code
.rxFoceiLinCmtCarryCapable Source code
.rxFoceiLinCmtCarryCheckCap Source code
.rxFoceiLinCmtCarryCtx Source code
.rxFoceiLinCmtCarryDetect Source code
.rxFoceiLinCmtCarryEligible Source code
.rxFoceiLinCmtCarryEmit Source code
.rxFoceiLinCmtCarryEpilogue Source code
.rxFoceiLinCmtCarryFinal Source code
.rxFoceiLinCmtCarryJumpCapable Source code
.rxFoceiLinCmtCarryModelOk Source code
.rxFoceiLinCmtCarryPairLines Source code
.rxFoceiLinCmtCarryPairsForBuild Source code
.rxFoceiLinCmtCarryPrelude Source code
.rxFoceiLinCmtCarryShape Source code
.rxFoceiLinCmtEventChain Source code
.rxFoceiLinCmtEventPredExtra Source code
.rxFoceiLinCmtEventRows Source code
.rxFoceiLinCmtOriginCall Source code
.rxGetDVFTransform Man page Source code
.rxInjectMatExpDdt Source code
.rxKeepMatExpNative Source code
.rxMatExpStateOrder Source code
.rxSolveGetControlForNlmixr Source code
.rxUiDecompressModelFun Source code
.rxUiDeparseFoceiControl Source code
.rxode2HasSafeLogDomain Source code
.rxode2stateOdeNoOutput Source code
.saemAddArgRange Source code
.saemAddDnormToErrLine Source code
.saemAddMcmcDiag Source code
.saemAddParHist Source code
.saemAddPseudoEtas Source code
.saemAliasTheta Source code
.saemAssertEtaPhi Source code
.saemAutoNu Source code
.saemBoundedResidOpt Source code
.saemCalcCov Source code
.saemCalcLikelihood Source code
.saemCalcLikelihoodTime Source code
.saemCheckCfg Source code
.saemControlToFoceiControl Source code
.saemCovRowOrder Source code
.saemCreateOutput Source code
.saemDeparseExtra Source code
.saemDropFitColumns Source code
.saemDropMuRefFromModel Man page Source code
.saemDropParameters Source code
.saemDropParametersIsMuRefCovariate Source code
.saemEndpointCandidates Source code
.saemEtaNoPhi Source code
.saemFamilyControl Source code
.saemFamilyFit Source code
.saemFimFixedResidSlots Source code
.saemFimToCov Source code
.saemFitModel Source code
.saemFoldPseudoEtas Source code
.saemGetCalcCwres Source code
.saemGetLikName Source code
.saemGqNodes Source code
.saemInstallAnalyticCov Source code
.saemInstallFullCov Source code
.saemIovExpandUi Source code
.saemIovFlattenPlus Source code
.saemIovInfo Source code
.saemIovPlusChains Source code
.saemIovThetaFor Source code
.saemIovUnparen Source code
.saemLikelihoodCandidates Source code
.saemLinFimVarBlock Source code
.saemLlObsHess Source code
.saemLlObsMask Source code
.saemLlSubjectPart Source code
.saemMixFix Source code
.saemModeledResidHasEta Source code
.saemModeledResidualCond Source code
.saemMonotonicResetTime Source code
.saemOmegaIsDiagonal Source code
.saemOpt1 Source code
.saemPhi0Newuoa Source code
.saemPhi1TargetMap Source code
.saemPhiTraceNames Source code
.saemPredArgRange Source code
.saemPseudoEtaBlankVariability Source code
.saemPseudoEtaCleanUi Source code
.saemPseudoEtaDropSlots Source code
.saemPseudoEtaFinalize Source code
.saemPseudoEtaLine Source code
.saemPseudoEtaThetaNames Source code
.saemPseudoEtaThetas Source code
.saemPseudoPhi1Ix Source code
.saemResEndpointIdx Source code
.saemResidF Source code
.saemRestorePseudoTransforms Source code
.saemSaCov Source code
.saemSpliceBlock Source code
.saemSpliceLinFimVar Source code
.saemSplicePhi0Theta Source code
.saemWarnDegenerateOmega Source code
.sampleOmega Source code
.sensEtaOrTheta Man page
.setCov Source code
.setCovAnalytic Source code
.setCovAssertControl Source code
.setCovDecoupled Source code
.setCovDecoupledMethod Source code
.setCovEnv Source code
.setCovFd Source code
.setCovFdMethod Source code
.setCovFromCache Source code
.setCovInstall Source code
.setOfvAdd Source code
.setOfvFo Source code
.setOfvImp Source code
.setOfvSaemQuad Source code
.setRoot Source code
.setSaemExtra Source code
.sigdigFactr Source code
.sigdigOptTol Source code
.sigdigScale Source code
.simInfo Source code
.simModelCacheGet Source code
.simModelCacheKey Source code
.simModelCacheReset Source code
.simModelCacheSet Source code
.slsqp Source code
.testBoundedTransform Source code
.trustControlToFoceiControl Source code
.trustFamilyControl Source code
.trustFamilyFit Source code
.trustFitModel Source code
.trustGetTheta Source code
.trustOuter Source code
.trustOuterBfgs Source code
.trustOuterCount Source code
.trustOuterCurvature Source code
.trustOuterDecrement Source code
.trustOuterFd Source code
.trustOuterMessage Source code
.trustOuterMethod Source code
.trustOuterObjfun Source code
.trustOuterRegion Source code
.trustOuterRun Source code
.trustWarnUnderConverged Source code
.uiApplyIov Source code
.uiApplyMu2 Man page Source code
.uiApplyMu2hook Man page Source code
.uiFinalizeIov Source code
.uiFinalizeMu2 Man page Source code
.uiFinalizeMu2hook Source code
.uiGetMu3 Source code
.uiGetMu4 Source code
.uiGetMu4f Source code
.uiGetThetaDropFixed Source code
.uiGetThetaEta Source code
.uiGetThetaEtaParams Source code
.uiIovOmegaEtas Source code
.uiIsMixedLinCmtOde Source code
.uiModifyForCovs Source code
.uiModifyForCovsRep Source code
.uninformativeEtas Source code
.uninformativeEtasExpand Source code
.uobyqa Source code
.uobyqaControlToFoceiControl Source code
.uobyqaFamilyControl Source code
.uobyqaFitModel Source code
.updateParFixedAddBsv Source code
.updateParFixedAddParameterLabel Source code
.updateParFixedAddShrinkage Source code
.updateParFixedApplyManualBacktransformations Source code
.updateParFixedApplyManualBacktransformationsI Source code
.updateParFixedApplySig Source code
.updateParFixedBackTransformFixed Source code
.updateParFixedGetEtaRow Source code
.vaeAssertContShapes Source code
.vaeBuildTh Source code
.vaeCanCluster Source code
.vaeClamp Source code
.vaeClusterBinds Source code
.vaeCoefCov Source code
.vaeCoefFactor Source code
.vaeControlToFoceiControl Source code
.vaeCovCenterValue Source code
.vaeCovCluster Source code
.vaeCovCoefBoundVec Source code
.vaeCovFamilies Source code
.vaeCovLevelValue Source code
.vaeCovLevels Source code
.vaeCovSelectModes Source code
.vaeCovariateCoefThetas Source code
.vaeCovariateSearch Source code
.vaeDataPrep Source code
.vaeDecoderModel Source code
.vaeDecoderPxz Source code
.vaeDecoderSolveSubject Source code
.vaeDetectShape Source code
.vaeElboStep Source code
.vaeElboStepInner Source code
.vaeEligible Source code
.vaeEncoderInitParams Source code
.vaeErrTypeCode Source code
.vaeFitModel Source code
.vaeGradEval Source code
.vaeGradInit Source code
.vaeGradReset Source code
.vaeGroupLink Source code
.vaeIcAdjInBounds Source code
.vaeInjectCov Source code
.vaeInjectNonMuEtas Source code
.vaeInnerEval Source code
.vaeInnerFoceiControl Source code
.vaeInnerFree Source code
.vaeInnerSetup Source code
.vaeInnerUpdate Source code
.vaeL0Candidates Source code
.vaeL0Path Source code
.vaeL0Supports Source code
.vaeLevelLit Source code
.vaeLogCenter Source code
.vaeModelCovariatePairs Source code
.vaeNonMuIsRegress Source code
.vaeNonMuThetas Source code
.vaeOdeFreeThetas Source code
.vaeOuterCols Source code
.vaeParRow Source code
.vaePhiDiagMsg Source code
.vaePinColumn Source code
.vaeRegressStage2 Source code
.vaeResolveShapes Source code
.vaeSelectedShape Source code
.vaeSetIniMixProb Source code
.vaeShapeAllowMask Source code
.vaeShapeBeta Source code
.vaeShapeCoefTag Source code
.vaeShapeExpr Source code
.vaeShapeFamily Source code
.vaeShapeUsable Source code
.vaeShapeValue Source code
.vaeShapesFor Source code
.vaeToFit Source code
.vaeTrain Source code
.vaeTruncList Source code
.vaeUniqueEtaName Source code
.vaeUniqueName Source code
.vaeUpdateErr Source code
.vaeUpdateModel Source code
.vaeUpdateModelPinned Source code
.viEst Source code
.viGetControl Source code
.viSetPe Source code
.viValidCtl Source code
.vpcSimSeeded Source code
.vpcZeroRanef Source code
.warnOnLostBoundedMuRef Source code
ACF Man page
RxODE Man page
VarCorr Man page
`$.nlmixr2Gill83` Source code
`/<-` Source code
`lag<-` Source code
`setCov.r,s` Source code
`setCov<-` Source code
aaaCranNlmixrThreads Man page Source code
add.dosing Man page
add.sampling Man page
addCwres Man page Source code
addNpde Man page Source code
addTable Man page Source code
adviElboGradFR_ Source code
adviElboGrad_ Source code
adviLoopFB_ Source code
adviLoopFR_ Source code
adviLoop_ Source code
adviOptimize_ Source code
adviThetaSensInfo_ Source code
agqControl Man page Source code
as.function.nlmixr2FitData Source code
as.rxUi Man page
as.rxUi.nlmixr2FitCore Source code
assertNlmixrFit Man page Source code
assertNlmixrFitData Man page Source code
assertNlmixrObjDataFrameRow Source code
augPred Man page
augPred.nlmixr2FitData Man page Source code
augPredTrans Source code
augment.nlmixr2FitCore Source code
bobyqaControl Man page Source code
boxCox Man page Source code
boxCox_ Source code
calc.2LL Source code
calc.COV Source code
censNormalPartials_ Source code
cholSE Man page Source code
cholSE_ Source code
confint.nlmixr2FitCore Source code
cutoff Source code
emviControl Man page Source code
error Source code Source code Source code Source code Source code Source code Source code
et Man page
et.nlmixr2FitData Source code
eventTable Man page
expit Man page
fbviControl Man page Source code
filterNormalLikeAndDoses Source code
fixed.effects Man page
fixef Man page
fixef.saemFit Source code
foControl Man page Source code
foceControl Man page Source code
foceiAnalyticGradPooled_ Source code
foceiCalcCov Source code
foceiCheckIndCounts_ Source code
foceiControl Man page Source code
foceiFitCpp_ Man page Source code
foceiGradAllAgqFR_ Source code
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foceiGradPooledDirect_ Man page Source code
foceiGradPooledSetupLoad_ Man page Source code
foceiIndEventCounts_ Source code
foceiIndLik_ Source code
foceiInnerLp Source code
foceiLik Source code
foceiLikCondBatchThetaGrad_ Source code
foceiLikCondGrad_ Source code
foceiLikCondThetaGrad_ Source code
foceiLikDims_ Source code
foceiLikEval_ Source code
foceiLikInnerObjective_ Source code
foceiLikIterPrintEnd Man page Source code
foceiLikIterPrintEnd_ Source code
foceiLikIterPrintStart Man page Source code
foceiLikIterPrintStart_ Source code
foceiLikLoad Man page Source code
foceiLikLoad_ Source code
foceiLikNMix_ Source code
foceiLikRowTick_ Source code
foceiLikRun Man page Source code
foceiLikSetOmegaInvC_ Source code
foceiLikSetThetaC_ Source code
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foceiLikThetaSensIdxC_ Source code
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foceiSetup_ Source code
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foceiSubjectGradFocei_ Source code
foceiSubjectRFR_ Source code
foceiSubjectRfoceFR_ Source code
focepControl Man page Source code
foiControl Man page Source code
formatMinWidth Man page
freeFocei Source code
geom_amt Man page
geom_cens Man page
getBaseSimModel.nlmixr2FitCoreSilent Source code
getBaseSimModelFit Man page Source code
getBaseSimModelFit.default Man page Source code
getBaseSimModelFit.fo Man page
getBaseSimModelFit.foce Man page
getBaseSimModelFit.focei Man page
getBaseSimModelFit.focep Man page
getBaseSimModelFit.foi Man page
getBaseSimModelFit.posthoc Man page
getData Man page
getOfvType Man page Source code
getValidNlmixrControl Man page Source code
getValidNlmixrCtl Man page Source code
getValidNlmixrCtl.agq Man page Source code
getValidNlmixrCtl.agqf Man page Source code
getValidNlmixrCtl.bfgs Man page
getValidNlmixrCtl.bobyqa Man page Source code
getValidNlmixrCtl.brent Man page
getValidNlmixrCtl.cg Man page
getValidNlmixrCtl.default Man page Source code
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getValidNlmixrCtl.foceif Man page Source code
getValidNlmixrCtl.focep Man page Source code
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getValidNlmixrCtl.ifagq Man page Source code
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getValidNlmixrCtl.ifoceif Man page Source code
getValidNlmixrCtl.ifocep Man page Source code
getValidNlmixrCtl.ifocepf Man page Source code
getValidNlmixrCtl.ilaplace Man page Source code
getValidNlmixrCtl.imp Man page Source code
getValidNlmixrCtl.impmap Man page Source code
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getValidNlmixrCtl.laplace Man page Source code
getValidNlmixrCtl.lbfgsb Man page
getValidNlmixrCtl.lbfgsb3c Man page Source code
getValidNlmixrCtl.magq Man page Source code
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getValidNlmixrCtl.mlaplace Man page Source code
getValidNlmixrCtl.mnpag Man page Source code
getValidNlmixrCtl.mnpb Man page Source code
getValidNlmixrCtl.n1qn1 Man page Source code
getValidNlmixrCtl.neldermead Man page
getValidNlmixrCtl.newuoa Man page Source code
getValidNlmixrCtl.nlm Man page Source code
getValidNlmixrCtl.nlme Man page Source code
getValidNlmixrCtl.nlminb Man page Source code
getValidNlmixrCtl.nls Man page Source code
getValidNlmixrCtl.npag Man page Source code
getValidNlmixrCtl.npb Man page Source code
getValidNlmixrCtl.optim Man page Source code
getValidNlmixrCtl.posthoc Man page Source code
getValidNlmixrCtl.predict Man page
getValidNlmixrCtl.qrpem Man page Source code
getValidNlmixrCtl.rxSolve Man page Source code
getValidNlmixrCtl.saem Man page Source code
getValidNlmixrCtl.sann Man page
getValidNlmixrCtl.simulate Man page
getValidNlmixrCtl.simulation Man page
getValidNlmixrCtl.tableControl Man page Source code
getValidNlmixrCtl.trust Man page Source code
getValidNlmixrCtl.uobyqa Man page Source code
getValidNlmixrCtl.vae Man page Source code
getVarCov Man page
getVarCov.nlmixr2FitCore Source code
glance.nlmixr2FitCore Source code
gqg.mlx Source code
groupedData Man page
iBoxCox Man page Source code
iBoxCox_ Source code
iYeoJohnson Man page Source code
iagqControl Man page Source code
ifoceControl Man page Source code
ifoceiControl Man page Source code
ifocepControl Man page Source code
ilaplaceControl Man page Source code
impControl Man page Source code
impCovControl Man page Source code
impPropKernel_ Source code
impQrPoints_ Source code
impSirIndex_ Source code
impmapControl Man page Source code
ini Man page
ini.nlmixr2FitCore Source code
is.latex Source code
isTRUE2 Source code
iterPrintControl Man page Source code
iterPrintParams Man page
laplaceControl Man page Source code
lbfgsb3cControl Man page Source code
likInner Source code
logit Man page
lotri Man page
magqControl Man page Source code
mfoceControl Man page Source code
mfoceiControl Man page Source code
mfocepControl Man page Source code
mlaplaceControl Man page Source code
model Man page
model.nlmixr2FitCore Source code
n1qn1Control Man page Source code
newuoaControl Man page Source code
nlmAdjustCov Source code
nlmAdjustHessian Source code
nlmCensInfo Source code
nlmControl Man page Source code
nlmFree Source code
nlmGetParHist Man page Source code
nlmGetScaleC Source code
nlmLikDims_ Source code
nlmLikEvalC_ Source code
nlmObjectiveSetup Man page Source code
nlmPrintHeader Source code
nlmScalePar Source code
nlmSetScaleC Source code
nlmSetup Source code
nlmSolveGradHess Source code
nlmSolveGradR Source code
nlmSolveR Source code
nlmSolveSwitch Source code
nlmTrustFit Source code
nlmUnscalePar Man page Source code
nlmWarnings Source code
nlme Man page
nlmeControl Man page
nlmerSolveGrad Man page Source code
nlminbControl Man page Source code
nlminbFunC Source code
nlmixr Man page
nlmixr2 Man page Source code
nlmixr2.function Man page Source code
nlmixr2.nlmixr2FitCore Man page Source code
nlmixr2.nlmixr2FitCoreSilent Man page
nlmixr2.nlmixr2FitData Man page
nlmixr2.rxUi Man page Source code
nlmixr2AllEst Man page Source code
nlmixr2AllEstType Man page Source code
nlmixr2AugPredSolve Man page Source code
nlmixr2CreateOutputFromUi Man page
nlmixr2Est Man page Source code
nlmixr2Est.agq Man page Source code
nlmixr2Est.agqf Man page Source code
nlmixr2Est.bfgs Man page
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nlmixr2Est.brent Man page
nlmixr2Est.cg Man page
nlmixr2Est.default Man page Source code
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nlmixr2Est.iagqf Man page Source code
nlmixr2Est.ifagq Man page Source code
nlmixr2Est.iflaplace Man page Source code
nlmixr2Est.ifoce Man page Source code
nlmixr2Est.ifocef Man page Source code
nlmixr2Est.ifocei Man page Source code
nlmixr2Est.ifoceif Man page Source code
nlmixr2Est.ifocep Man page Source code
nlmixr2Est.ifocepf Man page Source code
nlmixr2Est.ilaplace Man page Source code
nlmixr2Est.imp Man page Source code
nlmixr2Est.impmap Man page Source code
nlmixr2Est.inpag Man page Source code
nlmixr2Est.inpb Man page Source code
nlmixr2Est.laplace Man page Source code
nlmixr2Est.lbfgsb Man page
nlmixr2Est.lbfgsb3c Man page
nlmixr2Est.magq Man page Source code
nlmixr2Est.magqf Man page Source code
nlmixr2Est.mfagq Man page Source code
nlmixr2Est.mflaplace Man page Source code
nlmixr2Est.mfoce Man page Source code
nlmixr2Est.mfocef Man page Source code
nlmixr2Est.mfocei Man page Source code
nlmixr2Est.mfoceif Man page Source code
nlmixr2Est.mfocep Man page Source code
nlmixr2Est.mfocepf Man page Source code
nlmixr2Est.mlaplace Man page Source code
nlmixr2Est.mnpag Man page Source code
nlmixr2Est.mnpb Man page Source code
nlmixr2Est.n1qn1 Man page
nlmixr2Est.neldermead Man page
nlmixr2Est.newuoa Man page
nlmixr2Est.nlm Man page
nlmixr2Est.nlme Man page
nlmixr2Est.nlminb Man page
nlmixr2Est.nls Man page
nlmixr2Est.npag Man page Source code
nlmixr2Est.npb Man page Source code
nlmixr2Est.optim Man page
nlmixr2Est.output Man page
nlmixr2Est.posthoc Man page Source code
nlmixr2Est.predict Man page Source code
nlmixr2Est.qrpem Man page Source code
nlmixr2Est.rxSolve Man page Source code
nlmixr2Est.saem Man page Source code
nlmixr2Est.sann Man page
nlmixr2Est.simulate Man page Source code
nlmixr2Est.simulation Man page Source code
nlmixr2Est.trust Man page Source code
nlmixr2Est.uobyqa Man page
nlmixr2Est.vae Man page Source code
nlmixr2Est0 Source code
nlmixr2Eval_ Man page Source code
nlmixr2Gill83 Man page Source code
nlmixr2Gill83_ Source code
nlmixr2GradFun Man page Source code
nlmixr2Grad_ Man page Source code
nlmixr2Hess Man page Source code
nlmixr2Hess_ Source code
nlmixr2Keywords Man page
nlmixr2Logo Man page Source code
nlmixr2NlmeControl Man page Source code
nlmixr2ParHist_ Man page Source code
nlmixr2Parameters Source code
nlmixr2Print Man page Source code
nlmixr2Unscaled_ Man page Source code
nlmixr2Validate Man page Source code
nlmixr2Version Man page Source code
nlmixr2fix Man page Source code
nlmixr2iovLogsdCv Man page Source code
nlmixr2iovLogsdSd Man page Source code
nlmixr2iovLogvarCv Man page Source code
nlmixr2iovLogvarSd Man page Source code
nlmixr2iovSdCv Man page Source code
nlmixr2iovSdSd Man page Source code
nlmixr2iovVarCv Man page Source code
nlmixr2iovVarSd Man page Source code
nlmixrAddObjectiveFunctionDataFrame Man page Source code
nlmixrAddTiming Man page Source code
nlmixrCbind Man page Source code
nlmixrClone Man page Source code
nlmixrExpandFdParNlme_ Source code
nlmixrUpdateObject Man page Source code
nlmixrWithTiming Man page Source code
nlsControl Man page Source code
nmGetDistributionSaemLines Man page Source code
nmGetDistributionSaemLines.LL Man page
nmGetDistributionSaemLines.default Man page
nmGetDistributionSaemLines.norm Man page Source code
nmGetDistributionSaemLines.rxUi Man page Source code
nmNearPD Man page Source code
nmNearPD_ Source code
nmObjGet Man page Source code
nmObjGet.atol Man page Source code
nmObjGet.coefficients Man page Source code
nmObjGet.condition Man page Source code
nmObjGet.control Man page Source code
nmObjGet.cor Man page Source code
nmObjGet.covLvl Man page Source code
nmObjGet.covsInterpolation Man page Source code
nmObjGet.dataNormInfo Source code
nmObjGet.dataSav Man page Source code
nmObjGet.default Man page Source code
nmObjGet.env Man page Source code
nmObjGet.estimationModel Man page Source code
nmObjGet.eta Man page
nmObjGet.etaMat Source code
nmObjGet.finalUi Source code
nmObjGet.finalUiEnv Source code
nmObjGet.foceiControl Source code
nmObjGet.foceiThetaEtaParameters Source code
nmObjGet.hini Man page Source code
nmObjGet.hmax Man page Source code
nmObjGet.hmin Man page Source code
nmObjGet.idLvl Man page Source code
nmObjGet.iniDf0 Source code
nmObjGet.iniUi Source code
nmObjGet.innerModel Source code
nmObjGet.innerModelForce Source code
nmObjGet.ipredModel Source code
nmObjGet.maxordn Man page Source code
nmObjGet.maxords Man page Source code
nmObjGet.maxstepsOde Man page Source code
nmObjGet.md5 Man page Source code
nmObjGet.methodOde Man page Source code
nmObjGet.mixList Man page Source code
nmObjGet.mixNum Man page Source code
nmObjGet.modelName Man page Source code
nmObjGet.notes Man page Source code
nmObjGet.omegaR Man page Source code
nmObjGet.parHist Man page Source code
nmObjGet.parHistStacked Man page Source code
nmObjGet.phiCI Man page Source code
nmObjGet.phiR Man page Source code
nmObjGet.phiRSE Man page Source code
nmObjGet.phiSE Man page Source code
nmObjGet.predOnlyModel Source code
nmObjGet.ranef Man page Source code
nmObjGet.rtol Man page Source code
nmObjGet.rxControl Man page Source code
nmObjGet.rxControlWithVar Man page Source code
nmObjGet.saem Source code
nmObjGet.saemCfg Man page Source code
nmObjGet.saemDopredIpred Man page Source code
nmObjGet.saemDopredPred Man page Source code
nmObjGet.saemEvt Source code
nmObjGet.saemEvtDf Source code
nmObjGet.saemEvtM Source code
nmObjGet.saemEvtMDf Source code
nmObjGet.saemNmc Source code
nmObjGet.seed Man page Source code
nmObjGet.sigma Man page Source code
nmObjGet.simInfo Man page Source code
nmObjGet.simulationModel Man page Source code
nmObjGet.warnings Source code
nmObjGetControl Man page Source code
nmObjGetControl.agq Man page Source code
nmObjGetControl.bobyqa Man page Source code
nmObjGetControl.default Man page Source code
nmObjGetControl.emvi Man page Source code
nmObjGetControl.fbvi Man page Source code
nmObjGetControl.fo Man page Source code
nmObjGetControl.foce Man page Source code
nmObjGetControl.focei Man page Source code
nmObjGetControl.focep Man page Source code
nmObjGetControl.foi Man page Source code
nmObjGetControl.iagq Man page Source code
nmObjGetControl.ifoce Man page Source code
nmObjGetControl.ifocei Man page Source code
nmObjGetControl.ifocep Man page Source code
nmObjGetControl.ilaplace Man page Source code
nmObjGetControl.imp Man page Source code
nmObjGetControl.impmap Man page Source code
nmObjGetControl.inpag Man page Source code
nmObjGetControl.inpb Man page Source code
nmObjGetControl.laplace Man page Source code
nmObjGetControl.lbfgsb3c Man page Source code
nmObjGetControl.magq Man page Source code
nmObjGetControl.mfoce Man page Source code
nmObjGetControl.mfocei Man page Source code
nmObjGetControl.mfocep Man page Source code
nmObjGetControl.mlaplace Man page Source code
nmObjGetControl.mnpag Man page Source code
nmObjGetControl.mnpb Man page Source code
nmObjGetControl.n1qn1 Man page Source code
nmObjGetControl.newuoa Man page Source code
nmObjGetControl.nlm Man page Source code
nmObjGetControl.nlme Man page
nmObjGetControl.nlminb Man page Source code
nmObjGetControl.nls Man page Source code
nmObjGetControl.npag Man page Source code
nmObjGetControl.npb Man page Source code
nmObjGetControl.optim Man page Source code
nmObjGetControl.posthoc Man page Source code
nmObjGetControl.qrpem Man page Source code
nmObjGetControl.saem Man page Source code
nmObjGetControl.trust Man page Source code
nmObjGetControl.uobyqa Man page Source code
nmObjGetControl.vae Man page Source code
nmObjGetData Man page Source code
nmObjGetData.addCwres Man page Source code
nmObjGetData.dataLloq Source code
nmObjGetData.dataMergeFull Man page Source code
nmObjGetData.dataMergeInner Man page Source code
nmObjGetData.dataMergeLeft Man page Source code
nmObjGetData.dataMergeRight Man page Source code
nmObjGetData.dataUloq Source code
nmObjGetData.default Source code
nmObjGetData.fitMergeFull Man page Source code
nmObjGetData.fitMergeInner Man page Source code
nmObjGetData.fitMergeLeft Man page Source code
nmObjGetData.fitMergeRight Man page Source code
nmObjGetEstimationModel Man page Source code
nmObjGetEstimationModel.default Man page Source code
nmObjGetEstimationModel.saem Man page Source code
nmObjGetFoceiControl Man page Source code
nmObjGetFoceiControl.agq Man page Source code
nmObjGetFoceiControl.default Man page Source code
nmObjGetFoceiControl.foce Man page Source code
nmObjGetFoceiControl.focep Man page Source code
nmObjGetFoceiControl.iagq Man page Source code
nmObjGetFoceiControl.ifoce Man page Source code
nmObjGetFoceiControl.ifocei Man page Source code
nmObjGetFoceiControl.ifocep Man page Source code
nmObjGetFoceiControl.ilaplace Man page Source code
nmObjGetFoceiControl.imp Man page Source code
nmObjGetFoceiControl.impmap Man page Source code
nmObjGetFoceiControl.inpag Man page Source code
nmObjGetFoceiControl.inpb Man page Source code
nmObjGetFoceiControl.laplace Man page Source code
nmObjGetFoceiControl.magq Man page Source code
nmObjGetFoceiControl.mfoce Man page Source code
nmObjGetFoceiControl.mfocei Man page Source code
nmObjGetFoceiControl.mfocep Man page Source code
nmObjGetFoceiControl.mlaplace Man page Source code
nmObjGetFoceiControl.mnpag Man page Source code
nmObjGetFoceiControl.mnpb Man page Source code
nmObjGetFoceiControl.nlme Man page
nmObjGetFoceiControl.npag Man page Source code
nmObjGetFoceiControl.npb Man page Source code
nmObjGetFoceiControl.posthoc Man page Source code
nmObjGetFoceiControl.qrpem Man page Source code
nmObjGetFoceiControl.saem Man page Source code
nmObjGetIpredModel Man page Source code
nmObjGetIpredModel.default Man page Source code
nmObjGetIpredModel.saem Man page Source code
nmObjGetPredOnly Man page Source code
nmObjGetPredOnly.default Man page Source code
nmObjGetPredOnly.saem Man page Source code
nmObjGetRxSolve Man page Source code
nmObjGetRxSolve.default Man page Source code
nmObjHandleControlObject Man page Source code
nmObjHandleControlObject.agqControl Man page Source code
nmObjHandleControlObject.bobyqaControl Man page Source code
nmObjHandleControlObject.default Man page Source code
nmObjHandleControlObject.emviControl Man page Source code
nmObjHandleControlObject.foControl Man page Source code
nmObjHandleControlObject.foceControl Man page Source code
nmObjHandleControlObject.foceiControl Man page Source code
nmObjHandleControlObject.focepControl Man page Source code
nmObjHandleControlObject.foiControl Man page Source code
nmObjHandleControlObject.iagqControl Man page Source code
nmObjHandleControlObject.ifoceControl Man page Source code
nmObjHandleControlObject.ifoceiControl Man page Source code
nmObjHandleControlObject.ifocepControl Man page Source code
nmObjHandleControlObject.ilaplaceControl Man page Source code
nmObjHandleControlObject.impmapControl Man page Source code
nmObjHandleControlObject.laplaceControl Man page Source code
nmObjHandleControlObject.lbfgsb3cControl Man page Source code
nmObjHandleControlObject.magqControl Man page Source code
nmObjHandleControlObject.mfoceControl Man page Source code
nmObjHandleControlObject.mfoceiControl Man page Source code
nmObjHandleControlObject.mfocepControl Man page Source code
nmObjHandleControlObject.mlaplaceControl Man page Source code
nmObjHandleControlObject.n1qn1Control Man page Source code
nmObjHandleControlObject.newuoaControl Man page Source code
nmObjHandleControlObject.nlmControl Man page Source code
nmObjHandleControlObject.nlmeControl Man page
nmObjHandleControlObject.nlminbControl Man page Source code
nmObjHandleControlObject.nlsControl Man page Source code
nmObjHandleControlObject.optimControl Man page Source code
nmObjHandleControlObject.posthocControl Man page Source code
nmObjHandleControlObject.saemControl Man page Source code
nmObjHandleControlObject.trustControl Man page Source code
nmObjHandleControlObject.uobyqaControl Man page Source code
nmObjHandleControlObject.vaeControl Man page Source code
nmObjHandleModelObject Man page Source code
nmObjHandleModelObject.default Man page Source code
nmObjHandleModelObject.foceiModelList Man page Source code
nmObjHandleModelObject.saemModelList Man page Source code
nmObjUiSetCompressed Man page Source code
nmSuppressMsg Man page Source code
nmTest Man page
nmsimplex Man page Source code
npBuildPsi Man page Source code
npCondense_ Man page Source code
npEndpointForCmt_ Source code
npIpmBurke Man page Source code
npObjAtGamma_ Man page Source code
npSobolGrid_ Man page Source code
npagControl Man page Source code
npagCycle_ Man page Source code
npbControl Man page Source code
nsis Source code
odeSwapEsNoteInstalled_ Source code
odeSwapInfo_ Source code
odeSwapParLayoutFor_ Source code
odeSwapPlanFor_ Source code
odeSwapRetryTest_ Source code
ofv Man page
optimControl Man page Source code
optimFunC Source code
par.1cmt.CL Source code
par.1cmt.CL.oral Source code
par.1cmt.CL.oral.tlag Source code
par.1cmt.micro Source code
par.1cmt.micro.oral Source code
par.1cmt.micro.oral.tlag Source code
par.2cmt.CL Source code
par.2cmt.CL.oral Source code
par.2cmt.CL.oral.tlag Source code
par.2cmt.micro Source code
par.2cmt.micro.oral Source code
par.2cmt.micro.oral.tlag Source code
par.3cmt.CL Source code
par.3cmt.CL.oral Source code
par.3cmt.CL.oral.tlag Source code
par.3cmt.micro Source code
par.3cmt.micro.oral Source code
par.3cmt.micro.oral.tlag Source code
pdBlocked Man page
pdCompSymm Man page
pdConstruct Man page
pdDiag Man page
pdFactor Man page
pdIdent Man page
pdLogChol Man page
pdMat Man page
pdMatrix Man page
pdNatural Man page
pdSymm Man page
postFinalObjectHooks Man page Source code
postFinalObjectHooksAdd Man page Source code
postFinalObjectHooksRm Man page Source code
posthocControl Man page Source code
pow Source code
preFinalParTableHooks Man page Source code
preFinalParTableHooksAdd Man page Source code
preFinalParTableHooksRm Man page Source code
preProcessHooks Man page Source code
preProcessHooksAdd Man page Source code
preProcessHooksRm Man page Source code
predict.nlmixr2FitCore Man page Source code
print.nlmixr2Class Source code
print.nlmixr2FitCore Source code
print.nlmixr2FitCoreSilent Source code
print.nlmixr2Gill83 Source code
print.nlmixr2LstSilent Source code
print.saemFit Man page Source code
probit Man page
probitInv Man page
qrpemControl Man page Source code
random.effects Man page
ranef Man page
ranef.saemFit Source code
reStruct Man page
reexports Man page
refresh Source code
registerEstInterceptor Man page Source code
removeEstInterceptor Man page Source code
residuals.nlmixr2FitData Man page
rmEta Man page Source code
rsControl Man page Source code
rxCat Man page
rxClean Man page
rxControl Man page
rxGetDistributionFoceiLines Man page Source code
rxGetDistributionNlmeLines Man page Source code
rxGetDistributionNlmeLines.norm Source code
rxGetDistributionNlsLines Man page Source code
rxGetDistributionNlsLines.default Man page
rxGetDistributionNlsLines.norm Man page Source code
rxInit Man page
rxLhs Man page
rxModelVars Man page
rxModelVarsS3 Man page
rxModelVarsS3.nlmixr2FitCore Source code
rxModelVarsS3.nlmixr2FitCoreSilent Source code
rxParam Man page
rxParams Man page
rxParams.nlmixr2FitData Source code
rxSolve Man page
rxState Man page
rxUiDeparse Man page
rxUiDeparse.agqControl Source code
rxUiDeparse.bobyqaControl Source code
rxUiDeparse.emviControl Source code
rxUiDeparse.foceiControl Source code
rxUiDeparse.iagqControl Source code
rxUiDeparse.ilaplaceControl Source code
rxUiDeparse.laplaceControl Source code
rxUiDeparse.lbfgsb3cControl Source code
rxUiDeparse.magqControl Source code
rxUiDeparse.mlaplaceControl Source code
rxUiDeparse.n1qn1Control Source code
rxUiDeparse.newuoaControl Source code
rxUiDeparse.nlmControl Source code
rxUiDeparse.nlmeControl Source code
rxUiDeparse.nlminbControl Source code
rxUiDeparse.nlsControl Source code
rxUiDeparse.optimControl Source code
rxUiDeparse.saemControl Source code
rxUiDeparse.tableControl Source code
rxUiDeparse.trustControl Source code
rxUiDeparse.uobyqaControl Source code
rxUiDeparse.vaeControl Source code
rxUiGet.foceiCmtPreModel Source code
rxUiGet.foceiHdEta2 Man page
rxUiGet.foceiParams Source code
rxUiGet.getSplitMuModel Source code
rxUiGet.impmapThetaSens Source code
rxUiGet.loadPruneNlm Source code
rxUiGet.loadPruneNlmSens Source code
rxUiGet.nlmEnv Source code
rxUiGet.nlmHdTheta Source code
rxUiGet.nlmModel0 Source code
rxUiGet.nlmParIni Source code
rxUiGet.nlmParName Source code
rxUiGet.nlmParNameFun Source code
rxUiGet.nlmParams Source code
rxUiGet.nlmRxModel Source code
rxUiGet.nlmSensModel Source code
rxUiGet.nlmThetaS Source code
rxUiGet.optimParLower Source code
rxUiGet.optimParUpper Source code
rxUiGet.saemCovars Source code
rxUiGet.saemFunctionModPredQuote Source code
rxUiGet.saemInPars Source code
rxUiGet.saemInParsAndMuRefCovariates Source code
rxUiGet.saemMuRefCovariateDataFrame Source code
rxUiGet.saemPhi1Inner Source code
rxUiGet.thetaIniMix Source code
rxUiGet.thetaMixIndex Source code
rxUiGet.transUE Source code
rxode Man page
rxode2 Man page
rxode2hasLlik Source code
rxode2stateOde Man page Source code
saControl Man page Source code
saemControl Man page Source code
saemFormGTest Source code
saemGainFrozenSkipN_ Source code
saemPhi1RefineN_ Source code
saemSeedLayoutTest_ Source code
saem_do_pred Source code
saem_fit Source code
setCov Man page Source code
setCov.analytic Man page Source code
setCov.default Man page Source code
setCov.imp Man page Source code
setCov.r Man page Source code
setCov.r,s Man page
setCov.s Man page Source code
setCov.sa Man page Source code
setCov<- Man page
setCovAllMethods Man page Source code
setCovOptions Man page Source code
setCovOptions.default Man page Source code
setCovOptions.rsControl Man page Source code
setCovValue Man page Source code
setCovValue.default Man page Source code
setCovValue.matrix Man page Source code
setOfv Man page Source code
shi21CentralWrap Source code
simulate.nlmixr2FitCore Source code
solveGradNls Source code
sourceCppFunction Source code
sqrtm Man page Source code
stat_amt Man page
stat_cens Man page
summary.saemFit Man page Source code
tableControl Man page Source code
tidy.nlmixr2FitCore Source code
trustControl Man page Source code
uobyqaControl Man page Source code
update.nlmixr2FitCore Source code
use.utf Source code
vaeBestSubset_ Source code
vaeClusterSwapOnly_ Source code
vaeControl Man page Source code
vaeCovariates Man page Source code
vaeDecoderElboStep_ Source code
vaeDecoderPxz_ Source code
vaeDecoderSolveSubject_ Source code
vaeElboStepCpp_ Source code
vaeEncoderFwdBwd Source code
vaeInnerFree_ Source code
vaeInnerLik Source code
vaeInnerSetup_ Source code
vaeInnerUpdatePar_ Source code
vaeIterPrintGet_ Source code
vaeIterPrintRow_ Source code
vaeIterPrintStart_ Source code
vaeOuterSolve_ Source code
vaeScoreSupports_ Source code
vaeTrainCpp_ Source code
varComb Man page
varConstPower Man page
varExp Man page
varFixed Man page
varFunc Man page
varIdent Man page
varPower Man page
varWeights Man page
vpcNameDataCmts Man page Source code
vpcSim Man page Source code
vpcSimExpand Man page Source code
yeoJohnson Man page Source code
nlmixr2est documentation built on Sept. 20, 2026, 9:08 a.m.