nlmixr2est
Nonlinear Mixed Effects Models in Population PK/PD, Estimation Routines

Package index
Search the nlmixr2est package
Functions
705
Source code
106
Man pages
67
Home
/
CRAN
/
nlmixr2est: Nonlinear Mixed Effects Models in Population PK/PD, Estimation Routines
/
API

API for nlmixr2est
Nonlinear Mixed Effects Models in Population PK/PD, Estimation Routines

Global functions
%>% Man page
.DollarNames.nlmixr2FitCore Source code
.addBackInterestingMuEtas Source code
.addFoceiInfoToFit Source code
.addObjDfToReturn Source code
.as.data.frame Source code
.augPredExpandData Source code
.augPredIpredModel Source code
.bobyqa Source code
.bobyqaNLopt Source code
.calcCwres Source code
.calcCwres0 Source code
.calcIres Source code
.calcNpde Source code
.calcRes Source code
.calcShrinkOnly Source code
.calcTables Source code
.captureOutput Source code
.cloneEnv Source code
.coefPar Source code
.collectWarn Source code
.configsaem Source code
.cov2cor Source code
.createEstObject Source code
.createFoceiLineObject Source code
.createMuRefPkBlock Source code
.createSaemLineObject Source code
.data.frame Source code
.dataMergeStub Source code
.downgradeEtas Source code
.enQuote Source code
.expandSimModelAddTad Source code
.finalizeOverallTiming Source code
.fixNames Source code
.fmt3 Source code
.foceiFamilyControl Source code
.foceiFamilyReturn Source code
.foceiFitInternal Source code
.foceiOptEnvAssignNllik Source code
.foceiOptEnvAssignTol Source code
.foceiOptEnvLik Source code
.foceiOptEnvSetupBounds Source code
.foceiOptEnvSetupScaleC Source code
.foceiOptEnvSetupTransformIndexs Source code
.foceiPreProcessData Man page Source code
.foceiPredIpredList Source code
.foceiPrune Source code
.foceiSetupParHistData Source code
.foceiSetupSkipCov Source code
.foceiSolvePars Source code
.foceiSolveWithId Source code
.foceiToCmtLinesAndDvid Source code
.getBackTransformationFunction Source code
.getControlFromDots Source code
.getCorPrint Source code
.getParfn Source code
.getPureMuRef Source code
.getR Source code
.getRelevantLhs Source code
.getRxPredLlikOption Source code
.getSaemOmega Source code
.getSaemTheta Source code
.getSimModel Source code
.getUiFunFromIniAndModel Source code
.getZeroEtasFromModel Source code
.h2 Source code
.innerInternal Source code
.isAssignExpr Source code
.isCurEvalEncodedFunction Source code
.lbfgsb3c Source code
.lbfgsbLG Source code
.lbfgsbO Source code
.loadSymengine Source code
.muRefDefFix Source code
.newuoa Source code
.nlmeFamilyControl Source code
.nlmeFitDataSetup Source code
.nlmeFitModel Source code
.nlminb Source code
.nlmixr2FitUpdateParams Source code
.nlmixr2Md5 Source code
.nlmixr2TidyFixed Source code
.nlmixr2TidyRandom Source code
.nlmixr2TidyRandomPar Source code
.nlmixr2clearPipe Source code
.nlmixr2estLastPredSimulationInfo Man page Source code
.nlmixr2objectNameAssign Man page Source code
.nlmixr2savePipe Source code
.nlmixrCheckFoceiEnvironment Source code
.nlmixrEstUpdatesOrigModel Source code
.nlmixrFinalizeTiming Source code
.nlmixrFinalizeTimingConstructTable Source code
.nlmixrFoceiRestartIfNeeded Source code
.nlmixrMergeTimeWithExtraTime Source code
.nlmixrNlmeFun Man page Source code
.nlmixrPopTimingStack Source code
.nlmixrPreprocessUi Source code
.nlmixrPushTimingStack Source code
.nloptr Source code
.nmObjEnsureObjective Source code
.nmObjGetSupportedDollars Source code
.notesFit Source code
.nullInt Source code
.onAttach Source code
.onLoad Source code
.pagedPrint Source code
.popNlmixr2Timing Source code
.pushNlmixr2timing Source code
.rbindParHistory Source code
.reorderCols Source code
.replaceTaint Source code
.replaceThetaEtaWithNamed Source code
.resetCacheIfNeeded Source code
.residAdjustIpredNames Source code
.rxFinalizeInner Source code
.rxFinalizePred Source code
.rxGetDVFTransform Man page Source code
.rxSolveGetControlForNlmixr Source code
.saemAddParHist Source code
.saemCalcCov Source code
.saemCalcLikelihood Source code
.saemCalcLikelihoodTime Source code
.saemCheckCfg Source code
.saemControlToFoceiControl Source code
.saemDropMuRefFromModel Man page Source code
.saemDropParameters Source code
.saemDropParametersIsMuRefCovariate Source code
.saemFamilyControl Source code
.saemFamilyFit Source code
.saemFitModel Source code
.saemGetCalcCwres Source code
.saemGetDataForFit Source code
.saemGetLikName Source code
.saemOpt1 Source code
.saemResidF Source code
.sensEtaOrTheta Source code
.setCov Source code
.setOfvFo Source code
.setRoot Source code
.setSaemExtra Source code
.sigma Source code
.simInfo Source code
.slsqp Source code
.toRx Source code
.uiGetThetaEta Source code
.uiGetThetaEtaParams Source code
.updateParFixed Source code
.updateParFixedAddBsv Source code
.updateParFixedAddParameterLabel Source code
.updateParFixedAddShrinkage Source code
.updateParFixedApplyManualBacktransformations Source code
.updateParFixedGetEtaRow Source code
ACF Man page
RxODE Man page
VarCorr Man page
VarCorr.nlmixr2FitCore Source code
`$.nlmixr2FitCore` Source code
`$.nlmixr2FitData` Source code
`$.nlmixr2Gill83` Source code
add.dosing Man page
add.sampling Man page
addCwres Man page Source code
addNpde Man page Source code
addTable Man page Source code
as.function.nlmixr2FitData Source code
assertNlmixrFit Man page Source code
assertNlmixrFitData Man page Source code
assertNlmixrObjDataFrameRow Source code
augPred Man page
augPred.nlmixr2FitData Man page Source code
augPredTrans Source code
augment.nlmixr2FitCore Source code
boxCox Man page Source code
boxCox_ Source code
calc.2LL Source code
calc.COV Source code
cholSE Man page Source code
cholSE_ Source code
confint.nlmixr2FitCore Source code
cutoff Source code
et Man page
et.nlmixr2FitData Source code
eventTable Man page
expit Man page
filterNormalLikeAndDoses Source code
fixed.effects Man page
fixef Man page
fixef.nlmixr2FitCore Source code
fixef.saemFit Source code
foceiCalcCov Source code
foceiControl Man page Source code
foceiFitCpp_ Man page Source code
foceiInnerLp Source code
foceiLik Source code
foceiNumericGrad Source code
foceiOfv Source code
foceiOuter Source code
foceiOuterF Source code
foceiOuterG Source code
foceiSetup_ Source code
freeFocei Source code
geom_amt Man page
geom_cens Man page
getBaseSimModel.nlmixr2FitCoreSilent Source code
getBaseSimModelFit Man page Source code
getBaseSimModelFit.default Man page Source code
getBaseSimModelFit.fo Man page
getBaseSimModelFit.foce Man page
getBaseSimModelFit.focei Man page Source code
getBaseSimModelFit.foi Man page
getBaseSimModelFit.posthoc Man page
getData Man page
getData.nlmixr2FitCore Source code
getOfvType Man page Source code
getValidNlmixrControl Man page Source code
getValidNlmixrCtl Man page Source code
getValidNlmixrCtl.default Man page Source code
getValidNlmixrCtl.fo Man page
getValidNlmixrCtl.foce Man page
getValidNlmixrCtl.focei Man page Source code
getValidNlmixrCtl.foi Man page
getValidNlmixrCtl.nlme Man page Source code
getValidNlmixrCtl.posthoc Man page
getValidNlmixrCtl.rxSolve Man page Source code
getValidNlmixrCtl.saem Man page Source code
getValidNlmixrCtl.simulate Man page
getValidNlmixrCtl.simulation Man page
getValidNlmixrCtl.tableControl Man page Source code
getVarCov Man page
getVarCov.nlmixr2FitCore Source code
glance.nlmixr2FitCore Source code
gqg.mlx Source code
groupedData Man page
iBoxCox Man page Source code
iBoxCox_ Source code
iYeoJohnson Man page Source code
ini Man page
ini.nlmixr2FitCore Source code
is.latex Source code
likInner Source code
logLik.nlmixr2FitCore Source code
logLik.nlmixr2FitData Source code
logit Man page
lotri Man page
model Man page
model.nlmixr2FitCore Source code
nlme Man page
nlmeControl Man page
nlmixr Man page
nlmixr2 Man page Source code
nlmixr2.function Man page Source code
nlmixr2.nlmixr2FitCore Man page Source code
nlmixr2.nlmixr2FitData Man page
nlmixr2.rxUi Man page Source code
nlmixr2AllEst Man page Source code
nlmixr2AugPredSolve Man page Source code
nlmixr2CreateOutputFromUi Man page Source code
nlmixr2Est Man page Source code
nlmixr2Est.default Man page Source code
nlmixr2Est.fo Man page Source code
nlmixr2Est.foce Man page Source code
nlmixr2Est.focei Man page Source code
nlmixr2Est.foi Man page Source code
nlmixr2Est.nlme Man page
nlmixr2Est.output Man page Source code
nlmixr2Est.posthoc Man page Source code
nlmixr2Est.predict Man page Source code
nlmixr2Est.rxSolve Man page Source code
nlmixr2Est.saem Man page Source code
nlmixr2Est.simulate Man page Source code
nlmixr2Est.simulation Man page Source code
nlmixr2Est0 Source code
nlmixr2Eval_ Man page Source code
nlmixr2Gill83 Man page Source code
nlmixr2Gill83_ Source code
nlmixr2GradFun Man page Source code
nlmixr2Grad_ Man page Source code
nlmixr2Hess Man page Source code
nlmixr2Hess_ Source code
nlmixr2Keywords Man page
nlmixr2Logo Man page Source code
nlmixr2NlmeControl Man page Source code
nlmixr2ParHist_ Man page Source code
nlmixr2Parameters Source code
nlmixr2Print Man page Source code
nlmixr2Unscaled_ Man page Source code
nlmixr2Validate Man page Source code
nlmixr2Version Man page Source code
nlmixrAddObjectiveFunctionDataFrame Man page Source code
nlmixrAddTiming Man page Source code
nlmixrCbind Man page Source code
nlmixrClone Man page Source code
nlmixrExpandFdParNlme_ Source code
nlmixrUpdateObject Man page Source code
nlmixrWithTiming Man page Source code
nmGetDistributionSaemLines Man page Source code
nmGetDistributionSaemLines.norm Man page Source code
nmGetDistributionSaemLines.rxUi Man page Source code
nmNearPD Man page Source code
nmNearPD_ Source code
nmObjGet Man page Source code
nmObjGet.atol Man page Source code
nmObjGet.coefficients Man page Source code
nmObjGet.condition Man page Source code
nmObjGet.control Man page Source code
nmObjGet.cor Man page Source code
nmObjGet.covLvl Man page Source code
nmObjGet.covsInterpolation Man page Source code
nmObjGet.dataNormInfo Source code
nmObjGet.dataSav Man page Source code
nmObjGet.default Man page Source code
nmObjGet.env Man page Source code
nmObjGet.estimationModel Man page Source code
nmObjGet.finalUi Source code
nmObjGet.finalUiEnv Source code
nmObjGet.foceiControl Source code
nmObjGet.foceiThetaEtaParameters Source code
nmObjGet.hini Man page Source code
nmObjGet.hmax Man page Source code
nmObjGet.hmin Man page Source code
nmObjGet.idLvl Man page Source code
nmObjGet.iniUi Source code
nmObjGet.innerModel Source code
nmObjGet.innerModelForce Source code
nmObjGet.ipredModel Source code
nmObjGet.maxordn Man page Source code
nmObjGet.maxords Man page Source code
nmObjGet.maxstepsOde Man page Source code
nmObjGet.md5 Man page Source code
nmObjGet.methodOde Man page Source code
nmObjGet.modelName Man page Source code
nmObjGet.notes Man page Source code
nmObjGet.omegaR Man page Source code
nmObjGet.parHistStacked Man page Source code
nmObjGet.phiR Man page Source code
nmObjGet.phiRSE Man page Source code
nmObjGet.phiSE Man page Source code
nmObjGet.predOnlyModel Source code
nmObjGet.rtol Man page Source code
nmObjGet.rxControl Man page Source code
nmObjGet.rxControlWithVar Man page Source code
nmObjGet.saem Source code
nmObjGet.saemCfg Man page Source code
nmObjGet.saemDopredIpred Man page Source code
nmObjGet.saemDopredPred Man page Source code
nmObjGet.saemEvt Source code
nmObjGet.saemEvtDf Source code
nmObjGet.saemEvtM Source code
nmObjGet.saemEvtMDf Source code
nmObjGet.saemNmc Source code
nmObjGet.saemTransformedData Man page Source code
nmObjGet.seed Man page Source code
nmObjGet.sigma Man page Source code
nmObjGet.simInfo Man page Source code
nmObjGet.simulationModel Man page Source code
nmObjGet.warnings Source code
nmObjGetControl Man page Source code
nmObjGetControl.default Man page Source code
nmObjGetControl.fo Man page
nmObjGetControl.foce Man page
nmObjGetControl.focei Man page Source code
nmObjGetControl.foi Man page
nmObjGetControl.nlme Man page
nmObjGetControl.posthoc Man page
nmObjGetControl.saem Man page Source code
nmObjGetData Man page Source code
nmObjGetData.addCwres Man page Source code
nmObjGetData.dataLloq Source code
nmObjGetData.dataMergeFull Man page Source code
nmObjGetData.dataMergeInner Man page Source code
nmObjGetData.dataMergeLeft Man page Source code
nmObjGetData.dataMergeRight Man page Source code
nmObjGetData.dataUloq Source code
nmObjGetData.default Source code
nmObjGetData.fitMergeFull Man page Source code
nmObjGetData.fitMergeInner Man page Source code
nmObjGetData.fitMergeLeft Man page Source code
nmObjGetData.fitMergeRight Man page Source code
nmObjGetEstimationModel Man page Source code
nmObjGetEstimationModel.default Man page Source code
nmObjGetEstimationModel.saem Man page Source code
nmObjGetFoceiControl Man page Source code
nmObjGetFoceiControl.default Man page Source code
nmObjGetFoceiControl.nlme Man page
nmObjGetFoceiControl.saem Man page Source code
nmObjGetIpredModel Man page Source code
nmObjGetIpredModel.default Man page Source code
nmObjGetIpredModel.saem Man page Source code
nmObjGetPredOnly Man page Source code
nmObjGetPredOnly.default Man page Source code
nmObjGetPredOnly.saem Man page Source code
nmObjGetRxSolve Man page Source code
nmObjGetRxSolve.default Man page Source code
nmObjHandleControlObject Man page Source code
nmObjHandleControlObject.default Man page Source code
nmObjHandleControlObject.foceiControl Man page Source code
nmObjHandleControlObject.nlmeControl Man page
nmObjHandleControlObject.saemControl Man page Source code
nmObjHandleModelObject Man page Source code
nmObjHandleModelObject.default Man page Source code
nmObjHandleModelObject.foceiModelList Man page Source code
nmObjHandleModelObject.saemModelList Man page Source code
nmObjUiSetCompressed Man page Source code
nmSuppressMsg Man page Source code
nmTest Man page
nmsimplex Man page Source code
nobs.nlmixr2FitCore Source code
nsis Source code
ofv Man page Source code
ofv.nlmixr2FitData Source code
par.1cmt.CL Source code
par.1cmt.CL.oral Source code
par.1cmt.CL.oral.tlag Source code
par.1cmt.micro Source code
par.1cmt.micro.oral Source code
par.1cmt.micro.oral.tlag Source code
par.2cmt.CL Source code
par.2cmt.CL.oral Source code
par.2cmt.CL.oral.tlag Source code
par.2cmt.micro Source code
par.2cmt.micro.oral Source code
par.2cmt.micro.oral.tlag Source code
par.3cmt.CL Source code
par.3cmt.CL.oral Source code
par.3cmt.CL.oral.tlag Source code
par.3cmt.micro Source code
par.3cmt.micro.oral Source code
par.3cmt.micro.oral.tlag Source code
pdBlocked Man page
pdCompSymm Man page
pdConstruct Man page
pdDiag Man page
pdFactor Man page
pdIdent Man page
pdLogChol Man page
pdMat Man page
pdMatrix Man page
pdNatural Man page
pdSymm Man page
predict.nlmixr2FitCore Source code
print.nlmixr2Class Source code
print.nlmixr2FitCore Source code
print.nlmixr2FitCoreSilent Source code
print.nlmixr2Gill83 Source code
print.nlmixr2LstSilent Source code
print.saemFit Man page Source code
probit Man page
probitInv Man page
random.effects Man page
ranef Man page
ranef.nlmixr2FitCore Source code
ranef.saemFit Source code
reStruct Man page
reexports Man page
refresh Source code
residuals.nlmixr2FitData Man page Source code
rxCat Man page
rxClean Man page
rxControl Man page
rxGetDistributionFoceiLines Man page Source code
rxGetDistributionFoceiLines.cauchy Source code
rxGetDistributionFoceiLines.default Source code
rxGetDistributionFoceiLines.norm Source code
rxGetDistributionFoceiLines.rxUi Source code
rxGetDistributionFoceiLines.t Source code
rxGetDistributionNlmeLines Man page Source code
rxGetDistributionNlmeLines.norm Source code
rxInit Man page
rxLhs Man page
rxModelVars Man page
rxModelVarsS3 Man page
rxModelVarsS3.nlmixr2FitCore Source code
rxModelVarsS3.nlmixr2FitCoreSilent Source code
rxParam Man page
rxParams Man page
rxParams.nlmixr2FitData Source code
rxSolve Man page
rxState Man page
rxUiGet.ebe Source code
rxUiGet.foce Source code
rxUiGet.foceEnv Source code
rxUiGet.focei Source code
rxUiGet.foceiCmtPreModel Source code
rxUiGet.foceiEnv Source code
rxUiGet.foceiEtaNames Source code
rxUiGet.foceiEtaS Source code
rxUiGet.foceiFixed Source code
rxUiGet.foceiHdEta Source code
rxUiGet.foceiModel Source code
rxUiGet.foceiModel0 Source code
rxUiGet.foceiModel0ll Source code
rxUiGet.foceiModelCache Source code
rxUiGet.foceiModelDigest Source code
rxUiGet.foceiMuRefVector Source code
rxUiGet.foceiOptEnv Source code
rxUiGet.foceiParams Source code
rxUiGet.foceiSkipCov Source code
rxUiGet.foceiThetaS Source code
rxUiGet.getEBEEnv Source code
rxUiGet.getSplitMuModel Source code
rxUiGet.loadPrune Source code
rxUiGet.loadPruneSens Source code
rxUiGet.predDfFocei Source code
rxUiGet.saemCovars Source code
rxUiGet.saemFunctionModPredQuote Source code
rxUiGet.saemInPars Source code
rxUiGet.saemInParsAndMuRefCovariates Source code
rxUiGet.saemMuRefCovariateDataFrame Source code
rxode Man page
rxode2 Man page
rxode2hasLlik Source code
saemControl Man page Source code
saem_do_pred Source code
saem_fit Source code
setCov Man page Source code
setOfv Man page Source code
simulate.nlmixr2FitCore Source code
sourceCppFunction Source code
sqrtm Man page Source code
stat_amt Man page
stat_cens Man page
str.nlmixr2FitData Source code
summary.saemFit Man page Source code
tableControl Man page Source code
tidy.nlmixr2FitCore Source code
update.nlmixr2FitCore Source code
use.utf Source code
varComb Man page
varConstPower Man page
varExp Man page
varFixed Man page
varFunc Man page
varIdent Man page
varPower Man page
varWeights Man page
vcov.nlmixr2FitCore Source code
vpcNameDataCmts Man page Source code
vpcSim Man page Source code
vpcSimExpand Man page Source code
yeoJohnson Man page Source code
nlmixr2est documentation built on Oct. 8, 2023, 9:06 a.m.

R Package Documentation

rdrr.io home R language documentation Run R code online

Browse R Packages

CRAN packages Bioconductor packages R-Forge packages GitHub packages

We want your feedback!

Note that we can't provide technical support on individual packages. You should contact the package authors for that.
GitHub issue tracker
ian@mutexlabs.com
Personal blog

 
Embedding an R snippet on your website

Add the following code to your website.

For more information on customizing the embed code, read Embedding Snippets.

Close