API for omopgenerics
Methods and Classes for the OMOP Common Data Model

Global functions
$.cdm_reference Man page
$<-.cdm_reference Man page
.validateSummarisedResult Source code
[[.cdm_reference Man page
[[<-.cdm_reference Man page
`$.cdm_reference` Source code
`$<-.cdm_reference` Source code
`[[.cdm_reference` Source code
`[[<-.cdm_reference` Source code
achillesColumns Man page Source code
achillesTables Man page Source code
addClass Source code
addMesSup Source code
addPkgDetails Source code
addSignal Source code
anti_join.cdm_table Source code
appendNoNa Source code
arrange.cdm_table Source code
assertCharacter Man page Source code
assertChoice Man page Source code
assertClass Man page Source code
assertClassification Source code
assertCohortId Source code
assertDate Man page Source code
assertList Man page Source code
assertLogical Man page Source code
assertNumeric Man page Source code
assertTable Man page Source code
assertTableName Source code
assertTrue Man page Source code
assertValidation Source code
assertVersion Source code
assertWindowName Source code
attrition Man page Source code
attrition.cohort_table Man page Source code
bind Man page Source code
bind.NULL Source code
bind.cohort_table Man page Source code
bind.list Source code
bind.summarised_result Man page Source code
castAchillesColumns Source code
castCohortColumns Source code
castColumns Source code
castOmopColumns Source code
castTableColumns Source code
cdi Source code
cdmFromTables Man page Source code
cdmName Man page Source code
cdmName.cdm_reference Source code
cdmName.cdm_table Source code
cdmName.default Source code
cdmReference Man page Source code
cdmSelect Man page Source code
cdmSource Man page Source code
cdmSource.cdm_reference Source code
cdmSource.cdm_table Source code
cdmSource.default Source code
cdmSourceType Man page Source code
cdmTableFromSource Man page Source code
cdmTableFromSource.local_cdm Source code
cdmVersion Man page Source code
cdmVersion.cdm_reference Source code
cdmVersion.cdm_table Source code
cdmVersion.default Source code
checkChoices Source code
checkClass Source code
checkCodelistType Source code
checkCohortRequirements Man page Source code
checkColumnContent Source code
checkColumns Source code
checkColumns2 Source code
checkColumnsCdm Source code
checkColumnsFormat Source code
checkDistinct Source code
checkDuplicated Source code
checkFunction Source code
checkGroupCount Source code
checkInherits Source code
checkIntegerish Source code
checkLength Source code
checkListClass Source code
checkMax Source code
checkMin Source code
checkMinCharacter Source code
checkNA Source code
checkNa Source code
checkNaCohort Source code
checkNamed Source code
checkNull Source code
checkNumberColumns Source code
checkNumberRows Source code
checkNumeric Source code
checkObservationPeriod Source code
checkOverlap Source code
checkOverlapObservation Source code
checkPerson Source code
checkPlausibleObservationDates Source code
checkStartBeforeEndObservation Source code
checkStartEnd Source code
checkTrue Source code
checkUnique Source code
cl Source code
cohortCodelist Man page Source code
cohortColumns Man page Source code
cohortCount Man page Source code
cohortTables Man page Source code
collapse.cdm_table Source code
collapseStr Source code
collect.cdm_reference Man page Source code
collect.cdm_table Source code
collect.cohort_table Man page Source code
combine Source code
combineStrata Man page Source code
compute.cdm_table Man page Source code
compute.local_cdm Source code
consistentNaming Source code
constructCdmReference Source code
constructCdmSource Source code
constructCodelist Source code
constructCodelistWithDetails Source code
constructConceptSetExpression Source code
constructGeneratedCohortSet Source code
constructSummarisedResult Source code
correctAgeGroup Source code
count.cdm_table Source code
createCheckObject Source code
cross_join.cdm_table Source code
defaultCohortAttrition Source code
defaultCohortCodelist Source code
defaultCohortSet Source code
detectColsToCast Source code
dropSourceTable Man page Source code
dropSourceTable.cdm_reference Source code
dropSourceTable.local_cdm Source code
dropTable Man page Source code
dropTable.cdm_reference Source code
dropTable.local_cdm Source code
emptyAchillesTable Man page Source code
emptyCdmReference Man page Source code
emptyCodelist Man page Source code
emptyCodelistWithDetails Man page Source code
emptyCohortTable Man page Source code
emptyOmopTable Man page Source code
emptyOmopTableInternal Source code
emptySummarisedResult Man page Source code
emptyTable Source code
equal Source code
errorMessage Source code
estimateTypeChoices Man page Source code
exportCodelist Man page Source code
exportConceptSetExpression Man page Source code
exportSummarisedResult Man page Source code
filter Man page
filter.cdm_table Source code
full_join.cdm_table Source code
funToCast Source code
getCohortId Man page Source code
getCohortName Man page Source code
getColumns Source code
getEmptyField Source code
getGroupping Source code
getPersonIdentifier Man page Source code
getType Source code
getTypes Source code
getVersion Source code
getVocabularyVersion Source code
getWindowNames Source code
giveType Source code
group_by.cdm_table Source code
importCodelist Man page Source code
importConceptSetExpression Man page Source code
importSummarisedResult Man page Source code
importSummarisedResultFromPath Source code
inner_join.cdm_table Source code
insertFromSource Man page Source code
insertFromSource.local_cdm Source code
insertTable Man page Source code
insertTable.cdm_reference Source code
insertTable.local_cdm Source code
intersect.cdm_table Source code
isCase Source code
isIntegerish Source code
isResultSuppressed Man page Source code
isSentenceCase Source code
isSnakeCase Source code
isTableEmpty Man page Source code
joinSet Source code
keepAttributes Source code
keepClass Source code
left_join.cdm_table Source code
listSourceTables Man page Source code
listSourceTables.cdm_reference Source code
listSourceTables.local_cdm Source code
missingCohortTableNameError Source code
missingColumns Source code
mutate.cdm_table Source code
nameAgeGroup Source code
nest_join.cdm_table Source code
newAchillesTable Man page Source code
newCdmReference Man page Source code
newCdmSource Man page Source code
newCdmTable Man page Source code
newCodelist Man page Source code
newCodelistWithDetails Man page Source code
newCohortTable Man page Source code
newConceptSetExpression Man page Source code
newLocalSource Man page Source code
newOmopTable Man page Source code
newSummarisedResult Man page Source code
noReference Source code
omopColumns Man page Source code
omopTableFields Man page Source code
omopTables Man page Source code
omopgenerics Man page
omopgenerics-package Man page
participants Man page Source code
pivotSettings Source code
pivot_longer.cdm_table Source code
pivot_wider.cdm_table Source code
plural Source code
populateCohortAttrition Source code
populateCohortCodelist Source code
populateCohortSet Source code
print.cdm_reference Man page Source code
print.cdm_source Source code
print.codelist Man page Source code
print.codelist_with_details Man page Source code
print.conceptSetExpression Man page Source code
readSourceTable Man page Source code
readSourceTable.cdm_reference Source code
recordCohortAttrition Man page Source code
reexports Man page
removeClass Source code
report Source code
restoreAttributes Source code
restoreClass Source code
resultColumns Man page Source code
resultPackageVersion Man page Source code
right_join.cdm_table Source code
rowwise.cdm_table Source code
selectTables Source code
semi_join.cdm_table Source code
settings Man page Source code
settings.cohort_table Man page Source code
settings.summarised_result Man page Source code
sourceType Man page Source code
sourceType.cdm_reference Source code
sourceType.cdm_source Source code
sourceType.cdm_table Source code
sourceType.default Source code
str.cdm_reference Source code
summarise.cdm_table Source code
summary.cdm_reference Man page Source code
summary.cohort_table Man page Source code
summary.summarised_result Man page Source code
suppress Man page Source code
suppress.summarised_result Man page Source code
suppressColumn Source code
suppressCounts Source code
suppressGroup Source code
suppressLinkage Source code
suppressVariable Source code
tableChoice Source code
tableName Man page Source code
tableSource Man page Source code
tally.cdm_table Source code
thereIsOverlap Source code
tmpPrefix Man page Source code
toSnakeCase Man page Source code
ungroup.cdm_table Source code
union.cdm_table Source code
unionCohorts Source code
union_all.cdm_table Source code
uniqueCols Source code
uniqueId Man page Source code
uniqueTableName Man page Source code
updateAttrition Source code
updateCohortNames Source code
validateAgeGroupArgument Man page Source code
validateCdmArgument Man page Source code
validateCdmReference Source code
validateCdmSource Source code
validateCodelist Source code
validateCodelistWithDetails Source code
validateCohortArgument Man page Source code
validateCohortIdArgument Man page Source code
validateConceptSetArgument Man page Source code
validateConceptSetExpression Source code
validateGeneratedCohortSet Source code
validateNameArgument Man page Source code
validateNameLevel Man page Source code
validateResultArguemnt Man page Source code
validateResultArgument Man page Source code
validateSummariseResult Source code
validateTidyNames Source code
validateWindowArgument Man page Source code
validateX Source code
variableTypes Source code
verb Source code
warnColsToCast Source code
omopgenerics documentation built on Sept. 30, 2024, 9:16 a.m.