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# Copyright 2024 DARWIN EU (C)
#
# This file is part of omopgenerics
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
#' Export a codelist object.
#'
#' @param x A codelist
#' @param path Path to where files will be created.
#' @param type Type of files to export. Currently 'json' and 'csv' are
#' supported.
#'
#' @return Files with codelists
#' @export
#'
exportCodelist <- function(x, path, type = "json") {
assertChoice(type, choices = c("json", "csv"))
assertCharacter(path, length = 1)
if (!dir.exists(path)) {
cli::cli_abort(c("x" = "Given path does not exist"))
}
x <- validateCodelist(x)
files <- writeCodelist(x, path, type)
return(invisible(files))
}
writeCodelist <- function(x, path, type) {
purrr::imap_chr(x, \(x, nm) {
file <- file.path(path, paste0(nm, ".", type))
if (type == "csv") {
readr::write_csv(dplyr::tibble(concept_id = x), file = file)
} else if (type == "json") {
rlang::check_installed("jsonlite")
items <- purrr::map(x, \(x) {
list(
concept = list(
CONCEPT_ID = x,
CONCEPT_NAME = "",
STANDARD_CONCEPT = "",
STANDARD_CONCEPT_CAPTION = "",
INVALID_REASON = "",
INVALID_REASON_CAPTION = "",
CONCEPT_CODE = "",
DOMAIN_ID = "",
VOCABULARY_ID = "",
CONCEPT_CLASS_ID = ""
),
isExcluded = FALSE,
includeDescendants = FALSE,
includeMapped = FALSE
)
})
jsonlite::write_json(
list(items = items), path = file, pretty = TRUE, auto_unbox = TRUE
)
}
return(file)
})
}
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