oncomodel: Maximum likelihood tree models for oncogenesis
Version 1.0

Computing probabilistic tree models for oncogenesis based on genetic data using maximum likelihood.

AuthorAnja von Heydebreck <anja.von.heydebreck@merck.de>, contributions from Christiane Heiss <christiane.heiss@web.de>
Date of publication2012-10-29 08:59:19
MaintainerAnja von Heydebreck <anja.von.heydebreck@merck.de>
LicenseGPL (>= 2)
Version1.0
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("oncomodel")

Getting started

Package overview

Popular man pages

comp.freq: Compare Model Probabilities to Frequencies
kidney: Cytogenetic Data from Kidney Carcinoma
MLparameters: Compute Maximum Likelihood Parameters
MLtopology: Compute Maximum Likelihood Tree Topology
mrca: Most Recent Common Ancestor
oncomodel-package: Maximum likelihood tree models for oncogenesis
subtree: Subtree
See all...

All man pages Function index File listing

Man pages

boot.conf.values: Bootstrap Confidence Values
comp.freq: Compare Model Probabilities to Frequencies
is.tree: Compare with Tree Format
kidney: Cytogenetic Data from Kidney Carcinoma
leafset.prob: Probability of a Set of Leaves
leafset.prob2: Probability of a Set of Leaves
MLparameters: Compute Maximum Likelihood Parameters
MLtopology: Compute Maximum Likelihood Tree Topology
mrca: Most Recent Common Ancestor
oncomodel-package: Maximum likelihood tree models for oncogenesis
subtree: Subtree

Functions

MLparameters Man page
MLtopology Man page
boot.conf.values Man page
comp.freq Man page
is.tree Man page
kidney Man page
leafset.prob Man page
leafset.prob2 Man page Source code
mrca Man page
oncomodel Man page
oncomodel-package Man page
subtree Man page

Files

data
data/kidney.rda
INDEX
NAMESPACE
man
man/leafset.prob.Rd
man/subtree.Rd
man/is.tree.Rd
man/leafset.prob2.Rd
man/comp.freq.Rd
man/boot.conf.values.Rd
man/oncomodel-package.Rd
man/kidney.Rd
man/MLtopology.Rd
man/MLparameters.Rd
man/mrca.Rd
DESCRIPTION
MD5
R
R/subtree.R
R/MLparameters.R
R/leafset.prob2.R
R/MLtopology.R
R/mrca.R
R/is.tree.R
R/boot.conf.values.R
R/leafset.prob.R
R/comp.freq.R
oncomodel documentation built on May 19, 2017, 7:52 a.m.

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