oncomodel: Maximum likelihood tree models for oncogenesis

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Computing probabilistic tree models for oncogenesis based on genetic data using maximum likelihood.

Author
Anja von Heydebreck <anja.von.heydebreck@merck.de>, contributions from Christiane Heiss <christiane.heiss@web.de>
Date of publication
2012-10-29 08:59:19
Maintainer
Anja von Heydebreck <anja.von.heydebreck@merck.de>
License
GPL (>= 2)
Version
1.0

View on CRAN

Man pages

boot.conf.values
Bootstrap Confidence Values
comp.freq
Compare Model Probabilities to Frequencies
is.tree
Compare with Tree Format
kidney
Cytogenetic Data from Kidney Carcinoma
leafset.prob
Probability of a Set of Leaves
leafset.prob2
Probability of a Set of Leaves
MLparameters
Compute Maximum Likelihood Parameters
MLtopology
Compute Maximum Likelihood Tree Topology
mrca
Most Recent Common Ancestor
oncomodel-package
Maximum likelihood tree models for oncogenesis
subtree
Subtree

Files in this package

oncomodel
oncomodel/data
oncomodel/data/kidney.rda
oncomodel/INDEX
oncomodel/NAMESPACE
oncomodel/man
oncomodel/man/leafset.prob.Rd
oncomodel/man/subtree.Rd
oncomodel/man/is.tree.Rd
oncomodel/man/leafset.prob2.Rd
oncomodel/man/comp.freq.Rd
oncomodel/man/boot.conf.values.Rd
oncomodel/man/oncomodel-package.Rd
oncomodel/man/kidney.Rd
oncomodel/man/MLtopology.Rd
oncomodel/man/MLparameters.Rd
oncomodel/man/mrca.Rd
oncomodel/DESCRIPTION
oncomodel/MD5
oncomodel/R
oncomodel/R/subtree.R
oncomodel/R/MLparameters.R
oncomodel/R/leafset.prob2.R
oncomodel/R/MLtopology.R
oncomodel/R/mrca.R
oncomodel/R/is.tree.R
oncomodel/R/boot.conf.values.R
oncomodel/R/leafset.prob.R
oncomodel/R/comp.freq.R