leafset.prob: Probability of a Set of Leaves
In oncomodel: Maximum likelihood tree models for oncogenesis
Description
Usage
Arguments
Value
References
Examples
Description
Computes the probability of a set of leaves (chromosomal
aberrations) in an oncogenetic tree model.
Usage
1
leafset.prob(leafset, y)
Arguments
leafset
a character vector of one or more leaves (chromosomal aberrations).
y
the tree model as obtained from MLtopology.
Value
The probability of exactly a given set of leaves (chromosomal aberrations) in the tree.
References
von Heydebreck A, Gunawan B, Fuezesi L. 2004. Maximum likelihood estimation
of oncogenetic tree models. Biostatistics 5:545-556.
Examples
1
2
data(kidney)
leafset.prob(c("-3|-3p", "+5|+5q"), kidney$res)
oncomodel documentation built on May 1, 2019, 8:01 p.m.
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Description Usage Arguments Value References Examples
Description
Computes the probability of a set of leaves (chromosomal aberrations) in an oncogenetic tree model.
Usage
1 | leafset.prob(leafset, y)
|
Arguments
leafset |
a character vector of one or more leaves (chromosomal aberrations). |
y |
the tree model as obtained from MLtopology. |
Value
The probability of exactly a given set of leaves (chromosomal aberrations) in the tree.
References
von Heydebreck A, Gunawan B, Fuezesi L. 2004. Maximum likelihood estimation of oncogenetic tree models. Biostatistics 5:545-556.
Examples
1 2 | data(kidney)
leafset.prob(c("-3|-3p", "+5|+5q"), kidney$res)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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