Maximum likelihood tree models for oncogenesis

boot.conf.values | Bootstrap Confidence Values |

comp.freq | Compare Model Probabilities to Frequencies |

is.tree | Compare with Tree Format |

kidney | Cytogenetic Data from Kidney Carcinoma |

leafset.prob | Probability of a Set of Leaves |

leafset.prob2 | Probability of a Set of Leaves |

MLparameters | Compute Maximum Likelihood Parameters |

MLtopology | Compute Maximum Likelihood Tree Topology |

mrca | Most Recent Common Ancestor |

oncomodel-package | Maximum likelihood tree models for oncogenesis |

subtree | Subtree |

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