Description Usage Arguments Value Examples
Computes the maximum likelihood parameters for a given tree topology.
1 | MLparameters(x, tree, freq = NULL)
|
x |
a binary matrix whose rows are the (preferably unique) genetic profiles. |
tree |
the tree in matrix format. |
freq |
a vector whose length equals the number of rows of x, giving the frequency of each profile in the data. |
p |
a vector of the maximum likelihood edge parameters (model probabilities). |
totloglik |
the log-likelihood at the ML parameters. |
1 2 |
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