Compares the model probabilities of single alterations and pairs to the observed frequencies and shows scatterplots for the comparisons.

1 | ```
comp.freq(x, tree, p)
``` |

`x` |
a binary data matrix with rows representing tumors and columns representing genetic alterations. |

`tree` |
the tree in matrix format. |

`p` |
a vector of edge parameters (model probabilities). |

1 2 |

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