comp.freq: Compare Model Probabilities to Frequencies

In oncomodel: Maximum likelihood tree models for oncogenesis

Description

Compares the model probabilities of single alterations and pairs to the observed frequencies and shows scatterplots for the comparisons.

Usage

  comp.freq(x, tree, p)

Arguments

x	a binary data matrix with rows representing tumors and columns representing genetic alterations.
tree	the tree in matrix format.
p	a vector of edge parameters (model probabilities).

Examples

  data(kidney)
  comp.freq(kidney$x, kidney$res$tree, kidney$res$p)

Example output

Loading required package: ade4

oncomodel documentation built on May 1, 2019, 8:01 p.m.