plot.onemap_progeny_haplotypes: Plots progeny haplotypes

In onemap: Construction of Genetic Maps in Experimental Crosses

Plots progeny haplotypes

Description

Figure is generated with the haplotypes for each selected individual. As a representation, the recombination breakpoints are here considered to be in the mean point of the distance between two markers. It is important to highlight that it did not reflects the exact breakpoint position, specially if the genetic map have low resolution.

Usage

## S3 method for class 'onemap_progeny_haplotypes'
plot(
  x,
  col = NULL,
  position = "stack",
  show_markers = TRUE,
  main = "Genotypes",
  ncol = 4,
  ...
)

Arguments

x	object of class onemap_progeny_haplotypes
col	Color of parents' homologous.
position	"split" or "stack"; if "split" (default) the alleles' are plotted separately. if "stack" the parents' alleles are plotted together.
show_markers	logical; if TRUE, the markers (default) are plotted.
main	An overall title for the plot; default is NULL.
ncol	number of columns of the facet_wrap
...	currently ignored

Value

a ggplot graphic

Author(s)

Getulio Caixeta Ferreira, [e-mail]

Cristiane Taniguti, [e-mail]

Examples

 
data("onemap_example_out")
twopts <- rf_2pts(onemap_example_out)
lg1 <- make_seq(twopts, 1:5)
lg1.map <- map(lg1)
plot(progeny_haplotypes(lg1.map))

onemap documentation built on Nov. 26, 2022, 9:05 a.m.