annotation_grid: Get logical matrix of term annotation for group of cases

In ontologyPlot: Visualising Sets of Ontological Terms

Get logical matrix of term annotation for group of cases

Description

Get logical matrix of term annotation for group of cases

Usage

annotation_grid(
  ontology,
  term_sets,
  all_terms = grid_terms(ontology, term_sets),
  remove_unanimous = FALSE,
  cluster_rows = TRUE,
  cluster_cols = TRUE
)

Arguments

ontology	ontology_index object
term_sets	List of character vectors of ontological term IDs
all_terms	Character vector giving terms to use in annotation.
remove_unanimous	Logical value determining whether to remove terms present in all term_sets.
cluster_rows	Logical value rows determining whether to use hclust to cluster term_sets.
cluster_cols	Logical value rows determining whether to use hclust to cluster terms (based on correlation of inclusion in term_sets).

Value

Logical matrix.

ontologyPlot documentation built on May 29, 2024, 3:10 a.m.