ontologyPlot-package: Functions for Visualising Sets of Ontological Terms
In ontologyPlot: Visualising Sets of Ontological Terms

Description Details Author(s) References

Functions for visualising sets of ontological terms using the ‘graphviz’ layout system.

Package:	ontologyPlot
Type:	Package
Version:	1.0
Date:	2016-01-11
License:	GPL (>= 2)

This package succeeds the package hpoPlot with an improved interface and focusing on general ontologies. The key function is onto_plot, which creates an object of class ontology_plot which can be displayed as a graph or exported to dot format.

Daniel Greene <dg333@cam.ac.uk>

Maintainer: Daniel Greene <dg333@cam.ac.uk>

Greene D, Richardson S, Turro E (2017). 'ontologyX: a suite of R packages for working with ontological data. _Bioinformatics_, 33(7), 1104–1106.

‘The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data’, Nucl. Acids Res. (1 January 2014) 42 (D1): D966-D974 doi:10.1093/nar/gkt1026 Westbury, S. K. et al. (2015). Human Phenotype Ontology annotation and cluster analysis to un- ravel genetic defects in 707 cases with unexplained bleeding and platelet disorders. Genome Medicine. 7 (2015)

ontologyPlot documentation built on Feb. 10, 2021, 5:06 p.m.