get_pseudo_adjacency_matrix: Get an adjacency matrix for a set of ontological terms
In ontologyPlot: Visualising Sets of Ontological Terms
Description
Usage
Arguments
Value
See Also
Examples
Description
Get an adjacency matrix for a set of ontological terms
Usage
1
get_pseudo_adjacency_matrix(ontology, terms)
Arguments
ontology
ontology_index object
terms
Character vector of ontological terms
Value
A logical matrix representing the adjacency matrix of terms based on the directed acyclic graph of ontology. A TRUE entry means the term correspnding to the column is a parent of the row term within terms.
See Also
Examples
1
2
3
library(ontologyIndex)
data(hpo)
get_pseudo_adjacency_matrix(hpo, c("HP:0000118", "HP:0001873", "HP:0011877"))
ontologyPlot documentation built on Feb. 10, 2021, 5:06 p.m.
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Description Usage Arguments Value See Also Examples
Description
Get an adjacency matrix for a set of ontological terms
Usage
1 | get_pseudo_adjacency_matrix(ontology, terms)
|
Arguments
ontology |
|
terms |
Character vector of ontological terms |
Value
A logical matrix representing the adjacency matrix of terms based on the directed acyclic graph of ontology. A TRUE entry means the term correspnding to the column is a parent of the row term within terms.
See Also
Examples
1 2 3 | library(ontologyIndex)
data(hpo)
get_pseudo_adjacency_matrix(hpo, c("HP:0000118", "HP:0001873", "HP:0011877"))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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