get_adjacency_matrix: Get an adjacency matrix for a set of ontological terms
In ontologyPlot: Visualising Sets of Ontological Terms
get_adjacency_matrix R Documentation
Get an adjacency matrix for a set of ontological terms
Description
Get an adjacency matrix for a set of ontological terms
Usage
get_adjacency_matrix(ontology, terms)
Arguments
ontology
ontology_index object
terms
Character vector of ontological terms
Value
A logical matrix representing the adjacency matrix of terms based on the directed acyclic graph of ontology. A TRUE entry means the term correspnding to the column is a parent of the row term in ontology.
See Also
get_pseudo_adjacency_matrix
Examples
library(ontologyIndex)
data(hpo)
get_adjacency_matrix(hpo, c("HP:0000118", "HP:0001873", "HP:0011877"))
ontologyPlot documentation built on May 29, 2024, 3:10 a.m.
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| get_adjacency_matrix | R Documentation |
Get an adjacency matrix for a set of ontological terms
Description
Get an adjacency matrix for a set of ontological terms
Usage
get_adjacency_matrix(ontology, terms)
Arguments
ontology |
|
terms |
Character vector of ontological terms |
Value
A logical matrix representing the adjacency matrix of terms based on the directed acyclic graph of ontology. A TRUE entry means the term correspnding to the column is a parent of the row term in ontology.
See Also
get_pseudo_adjacency_matrix
Examples
library(ontologyIndex)
data(hpo)
get_adjacency_matrix(hpo, c("HP:0000118", "HP:0001873", "HP:0011877"))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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