colour_by_term_set: Function to set colours of nodes in plot to distinguish terms...

In ontologyPlot: Visualising Sets of Ontological Terms

Function to set colours of nodes in plot to distinguish terms belonging to different term sets

Description

Function to set colours of nodes in plot to distinguish terms belonging to different term sets

Usage

colour_by_term_set(
  ontology,
  terms,
  term_sets,
  colour_generator = rainbow,
  alpha = 0.5
)

Arguments

ontology	ontology_index object
terms	Character vector of ontological terms
term_sets	List of character vectors of ontological term IDs
colour_generator	Function which returns a vector of colours, e.g. rainbow or heat.colors.
alpha	alpha parameter to pass to colour_generator.

Value

Character vector of colours, named by term.

See Also

colour_by_frequency, colour_by_population_frequency

ontologyPlot documentation built on May 29, 2024, 3:10 a.m.