colour_by_population_frequency: Function to assign colours to terms based on population...

In ontologyPlot: Visualising Sets of Ontological Terms

Description

Function to assign colours to terms based on population frequency of terms

Usage

colour_by_population_frequency(ontology, terms, frequencies,
  colour_palette = colorRampPalette(c("Yellow", "Green", "#0099FF"))(10),
  max_colour_freq = max(terms_freq), min_colour_freq = min(terms_freq))

Arguments

ontology	ontology_index object
terms	Character vector of ontological terms
frequencies	Numeric vector of term frequencies named by term IDs
colour_palette	Character vector of colours for the different information contents of the terms to be plotted, going from rare to common
max_colour_freq	Numeric value in [0, 1] giving the maximum frequency (to which the dullest color will be assigned)
min_colour_freq	Numeric value in [0, 1] giving the minimum frequency (to which the brightest color will be assigned)

Value

Character vector of colours, named by term

See Also

colour_by_term_set, colour_by_frequency

ontologyPlot documentation built on Feb. 10, 2021, 5:06 p.m.