colour_by_population_frequency: Function to assign colours to terms based on population...

In ontologyPlot: Visualising Sets of Ontological Terms

Function to assign colours to terms based on population frequency of terms

Description

Function to assign colours to terms based on population frequency of terms

Usage

colour_by_population_frequency(
  ontology,
  terms,
  frequencies,
  colour_palette = colorRampPalette(c("Yellow", "Green", "#0099FF"))(10),
  max_colour_freq = max(terms_freq),
  min_colour_freq = min(terms_freq)
)

Arguments

ontology	ontology_index object
terms	Character vector of ontological terms
frequencies	Numeric vector of term frequencies named by term IDs
colour_palette	Character vector of colours for the different information contents of the terms to be plotted, going from rare to common
max_colour_freq	Numeric value in [0, 1] giving the maximum frequency (to which the dullest color will be assigned)
min_colour_freq	Numeric value in [0, 1] giving the minimum frequency (to which the brightest color will be assigned)

Value

Character vector of colours, named by term

See Also

colour_by_term_set, colour_by_frequency

ontologyPlot documentation built on May 29, 2024, 3:10 a.m.