remove_uninformative_terms: Remove uninformative terms from union of all terms in set of...
In ontologyPlot: Visualising Sets of Ontological Terms
Description
Usage
Arguments
Value
Examples
Description
For a set of ontological annotation sets, remove terms annotated to the same objects as all their children. Useful for selecting terms for summarising a set of annotation sets, as it can lead to a significant reduction in the number of terms.
Usage
1
remove_uninformative_terms(ontology, term_sets)
Arguments
ontology
ontology_index object
term_sets
List of character vectors of ontological term IDs
Value
Character vector of terms
Examples
1
2
3
library(ontologyIndex)
data(hpo)
remove_uninformative_terms(hpo, list(Patient1=c("HP:0001873","HP:0000118")))
Example output
[1] "HP:0001873"
ontologyPlot documentation built on Feb. 10, 2021, 5:06 p.m.
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Description Usage Arguments Value Examples
Description
For a set of ontological annotation sets, remove terms annotated to the same objects as all their children. Useful for selecting terms for summarising a set of annotation sets, as it can lead to a significant reduction in the number of terms.
Usage
1 | remove_uninformative_terms(ontology, term_sets)
|
Arguments
ontology |
|
term_sets |
List of character vectors of ontological term IDs |
Value
Character vector of terms
Examples
1 2 3 | library(ontologyIndex)
data(hpo)
remove_uninformative_terms(hpo, list(Patient1=c("HP:0001873","HP:0000118")))
|
Example output
[1] "HP:0001873"
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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