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#' @title S3 Plotting Graphical Model Check
#' @exportS3Method plot grm
#' @keywords methods
#' @method plot grm
#' @description S3 plotting method for object of class\code{c("grm","list")}
#' @param x object of class\code{c("grm","list")}
#' @param xymin optional lower limit for xy-axis
#' @param xymax optional upper limit for xy-axis
#' @param ci numeric defining confidence intervall for point estimator
#' @param main see \code{\link{plot}}
#' @param col.error vector of colors for error bars
#' @param col.diag color for the diagonal of the plot
#' @param itemNames logical wether to plot itemnames
#' @param cex.names magnification factor for itemnames
#' @param type see \code{\link{plot}}
#' @param xlab see \code{\link{plot}}
#' @param ylab see \code{\link{plot}}
#' @param pch see \code{\link{plot}}
#' @param las see \code{\link{plot}}
#' @param cex.axis see \code{\link{plot}}
#' @param ... other parameters passed to plot
########################### hier die plot method für grm #############################
plot.grm<-function(x, xymin=NULL, xymax=NULL, ci=2, main=NULL, col.error="blue", col.diag="red", itemNames=TRUE, cex.names=.8, type="b", xlab=NULL, ylab=NULL, pch=43, las=3, cex.axis = 0.5, ...){
if(length(main)==0){main<-deparse(substitute(x))}
#sonderfall 2 subsamples
if (length(x)==2){
subsamp_names <- names(x)
# Itemnames<-names(x[[1]]$threshold[,dim(x[[2]]$threshold)[2]])
Itemnames <- rownames(x[[1]]$threshold)
# X<-x[[subsamp_names[1]]]$threshold[,dim(x[[ subsamp_names[1] ]]$threshold)[2]]
# Y<-x[[subsamp_names[2]]]$parameter[,dim(x[[ subsamp_names[2] ]]$parameter)[2]]
X<-x[[subsamp_names[1]]]$sigma
Y<-x[[subsamp_names[2]]]$sigma
# XS<-x[[ subsamp_names[1] ]]$SE[,dim(x[[ subsamp_names[1] ]]$SE)[2]]
# YS<-x[[ subsamp_names[2] ]]$SE[,dim(x[[ subsamp_names[2] ]]$SE)[2]]
XS<-x[[ subsamp_names[1] ]]$SEsigma
YS<-x[[ subsamp_names[2] ]]$SEsigma
##### plotingrange festlegen mit leerplot
if(length(xymax)==0){xymax<-(round((max(c(max(X),max(Y))) + 3*(max(c(max(XS),max(YS)))))*10))/10}
if(length(xymin)==0){xymin<-(round((min(c(min(X),min(Y))) - 3*(max(c(max(XS),max(YS)))))*10))/10}
xx<-c(xymin,xymax)
yy<-c(xymin,xymax)
if (length(xlab)==0) {xlab <- subsamp_names[1]}
if (length(ylab)==0) {ylab <- subsamp_names[2]}
plot(x=xx,y=yy,type="n",bty="n", main=main, xlab=xlab, ylab=ylab, cex.axis=cex.axis, ...)
# hilfsfunktion elipse
eli<-function(x.cent,y.cent,xb,yh, ...){
# plotten einer elipse
nseg=360
xx <- x.cent + xb*cos( seq(0,2*pi, length.out=nseg) )
yy <- y.cent + yh*sin( seq(0,2*pi, length.out=nseg) )
lines(xx,yy,col=col.error,...)
}
##############
##### plotten der grafik
if (itemNames!=TRUE){pch=""}
if (itemNames==TRUE){text(X,Y,Itemnames,cex=cex.names,...)}
points(X,Y,pch=pch,...)
abline(0,1,col=col.diag,...)
for (i in 1: length(X)){ eli(X[i],Y[i],XS[i]*ci,YS[i]*ci) }
}
if (length(x)!=2){cat("actualy no plotting method for", length(x) ,"subsample(s) available","\n") }
}
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