View source: R/omics_service.R
omics | R Documentation |
This is the AWS HealthOmics API Reference. For an introduction to the service, see What is AWS HealthOmics? in the AWS HealthOmics User Guide.
omics(config = list(), credentials = list(), endpoint = NULL, region = NULL)
config |
Optional configuration of credentials, endpoint, and/or region.
|
credentials |
Optional credentials shorthand for the config parameter
|
endpoint |
Optional shorthand for complete URL to use for the constructed client. |
region |
Optional shorthand for AWS Region used in instantiating the client. |
A client for the service. You can call the service's operations using
syntax like svc$operation(...)
, where svc
is the name you've assigned
to the client. The available operations are listed in the
Operations section.
svc <- omics( config = list( credentials = list( creds = list( access_key_id = "string", secret_access_key = "string", session_token = "string" ), profile = "string", anonymous = "logical" ), endpoint = "string", region = "string", close_connection = "logical", timeout = "numeric", s3_force_path_style = "logical", sts_regional_endpoint = "string" ), credentials = list( creds = list( access_key_id = "string", secret_access_key = "string", session_token = "string" ), profile = "string", anonymous = "logical" ), endpoint = "string", region = "string" )
abort_multipart_read_set_upload | Stops a multipart upload |
accept_share | Accept a resource share request |
batch_delete_read_set | Deletes one or more read sets |
cancel_annotation_import_job | Cancels an annotation import job |
cancel_run | Cancels a run |
cancel_variant_import_job | Cancels a variant import job |
complete_multipart_read_set_upload | Concludes a multipart upload once you have uploaded all the components |
create_annotation_store | Creates an annotation store |
create_annotation_store_version | Creates a new version of an annotation store |
create_multipart_read_set_upload | Begins a multipart read set upload |
create_reference_store | Creates a reference store |
create_run_group | You can optionally create a run group to limit the compute resources for the runs that you add to the group |
create_sequence_store | Creates a sequence store |
create_share | Creates a cross-account shared resource |
create_variant_store | Creates a variant store |
create_workflow | Creates a workflow |
delete_annotation_store | Deletes an annotation store |
delete_annotation_store_versions | Deletes one or multiple versions of an annotation store |
delete_reference | Deletes a genome reference |
delete_reference_store | Deletes a genome reference store |
delete_run | Deletes a workflow run |
delete_run_group | Deletes a workflow run group |
delete_sequence_store | Deletes a sequence store |
delete_share | Deletes a resource share |
delete_variant_store | Deletes a variant store |
delete_workflow | Deletes a workflow |
get_annotation_import_job | Gets information about an annotation import job |
get_annotation_store | Gets information about an annotation store |
get_annotation_store_version | Retrieves the metadata for an annotation store version |
get_read_set | Gets a file from a read set |
get_read_set_activation_job | Gets information about a read set activation job |
get_read_set_export_job | Gets information about a read set export job |
get_read_set_import_job | Gets information about a read set import job |
get_read_set_metadata | Gets details about a read set |
get_reference | Gets a reference file |
get_reference_import_job | Gets information about a reference import job |
get_reference_metadata | Gets information about a genome reference's metadata |
get_reference_store | Gets information about a reference store |
get_run | Gets information about a workflow run |
get_run_group | Gets information about a workflow run group |
get_run_task | Gets information about a workflow run task |
get_sequence_store | Gets information about a sequence store |
get_share | Retrieves the metadata for the specified resource share |
get_variant_import_job | Gets information about a variant import job |
get_variant_store | Gets information about a variant store |
get_workflow | Gets information about a workflow |
list_annotation_import_jobs | Retrieves a list of annotation import jobs |
list_annotation_stores | Retrieves a list of annotation stores |
list_annotation_store_versions | Lists the versions of an annotation store |
list_multipart_read_set_uploads | Lists multipart read set uploads and for in progress uploads |
list_read_set_activation_jobs | Retrieves a list of read set activation jobs |
list_read_set_export_jobs | Retrieves a list of read set export jobs |
list_read_set_import_jobs | Retrieves a list of read set import jobs |
list_read_sets | Retrieves a list of read sets |
list_read_set_upload_parts | This operation will list all parts in a requested multipart upload for a sequence store |
list_reference_import_jobs | Retrieves a list of reference import jobs |
list_references | Retrieves a list of references |
list_reference_stores | Retrieves a list of reference stores |
list_run_groups | Retrieves a list of run groups |
list_runs | Retrieves a list of runs |
list_run_tasks | Retrieves a list of tasks for a run |
list_sequence_stores | Retrieves a list of sequence stores |
list_shares | Retrieves the resource shares associated with an account |
list_tags_for_resource | Retrieves a list of tags for a resource |
list_variant_import_jobs | Retrieves a list of variant import jobs |
list_variant_stores | Retrieves a list of variant stores |
list_workflows | Retrieves a list of workflows |
start_annotation_import_job | Starts an annotation import job |
start_read_set_activation_job | Activates an archived read set |
start_read_set_export_job | Exports a read set to Amazon S3 |
start_read_set_import_job | Starts a read set import job |
start_reference_import_job | Starts a reference import job |
start_run | Starts a workflow run |
start_variant_import_job | Starts a variant import job |
tag_resource | Tags a resource |
untag_resource | Removes tags from a resource |
update_annotation_store | Updates an annotation store |
update_annotation_store_version | Updates the description of an annotation store version |
update_run_group | Updates a run group |
update_variant_store | Updates a variant store |
update_workflow | Updates a workflow |
upload_read_set_part | This operation uploads a specific part of a read set |
## Not run:
svc <- omics()
svc$abort_multipart_read_set_upload(
Foo = 123
)
## End(Not run)
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