peplib: Peptide Library Analysis Methods

This package provides a variety of methods for dealing with analysis of peptide library data, including clustering, motif finding, and QSAR model fitting.

Install the latest version of this package by entering the following in R:
install.packages("peplib")
AuthorAndrew White <white.d.andrew@gmail.com>
Date of publication2013-04-15 10:20:32
MaintainerAndrew White <white.d.andrew@gmail.com>
LicenseGPL (>= 2)
Version1.5.1

View on CRAN

Functions

aclust Man page
AMPSequences Man page
AMPSequences.response Man page
BIC Man page
BIC,MotifModel-method Man page
BIC,MotifModelSet-method Man page
blosum50 Man page
blosum62 Man page
blosum90 Man page
changeClusterFormat Man page
classify Man page
classify,MotifModelSet-method Man page
defaultBaseMatrix Man page
default.MetricParams Man page
descriptors Man page
Descriptors Man page
Descriptors-class Man page
dist,Sequences-method Man page
logLik,MotifModel-method Man page
logLik,MotifModelSet-method Man page
logLik,OOPS-method Man page
logLik,SSOOPS-method Man page
logLik,ZOOPS-method Man page
MetricParams Man page
MetricParams-class Man page
motifModel Man page
MotifModel Man page
MotifModel-class Man page
motifModelSet Man page
MotifModelSet Man page
MotifModelSet-class Man page
motifString Man page
motifString,MotifModel-method Man page
plot,Descriptors-method Man page
plotFits Man page
plotFits,MotifModel-method Man page
plot,MotifModel-method Man page
plot,MotifModelSet-method Man page
plotPositions Man page
plotPositions,MotifModel-method Man page
plot,Sequences-method Man page
plotStartingPosition Man page
plotStartingPosition,MotifModel-method Man page
predict,MotifModel-method Man page
predict,MotifModelSet-method Man page
print,MotifModel-method Man page
rbind,Sequences-method Man page
read.fasta Man page
read.sequences Man page
residuals,MotifModel-method Man page
residuals,MotifModelSet-method Man page
Sequences Man page
Sequences-class Man page
[,Sequences-method Man page
SHP2Sequences Man page
simpleDescriptors Man page
TULASequences Man page
write.fasta Man page
write.sequences Man page

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.