Description Usage Arguments Details Value Note Author(s) See Also Examples
Clusters a matrix of peptide sequences using kmeans or agglomerative clustering
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sDistMatrix 

clusterNumber 
The number of clusters to create. 
verbose 
Controls how much logging information is printed. 
type 
There are two 
knstart 
The number of times to execute the 
During each round, the agglomerative clustering technique combines the points or sets of points which have the smallest distance to one another. The distance measure is the smallest pairwise distance between two sets of points.
aclust
returns a list where each element represents a
cluster. Each element in the list is an array of integers, where each integer is the
index of sequence (the row of the input sequence matrix).
The "kmeans" is much much faster.
Andrew White
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