write.sequences: Write out the sequences as a sequence file
In peplib: Peptide Library Analysis Methods

Description Usage Arguments Details Author(s) See Also

Write out the given sequences as a sequence file

1	write.sequences(seqs, motifModel = NULL, file = "", append = FALSE)

`seqs`	`Sequences` object containing sequences to be written
`motifModel`	An optional `MotifModel` fit to the `Sequences`. This make it so that only the motifs are output!
`file`	Path to file where sequences will be written
`append`	logical. Only relevant if `file` is a character string. If `TRUE`, the output is appended to the file. If `FALSE`, any existing file of the name is destroyed.

If a MotifModel is passed, then the motifs are extracted from the sequences and only those are output. Otherwise, the complete sequences are written. The format used is one sequence per line.

Andrew White

Sequences, MotifModel, write.sequences.

peplib documentation built on May 29, 2017, 10:52 p.m.