AMPSequences.response: Antimicrobial peptide sequence responses
In peplib: Peptide Library Analysis Methods
Description
Usage
Format
Source
Description
A data frame containing the antimicrobial activity for each peptide in
the AMPSequences dataset.
Usage
1
Format
SequenceThe sequence name
E-coliThe activity on organism E. coli
N-gonorrhoeae-F.62.The activity on organism N. gonorrhoeae
N-gonorrhoeae-FA.19.The activity on organism N. gonorrhoeae
L-monocytogenesThe activity on organism L. monocytogenes
C-albicansThe activity on organism C. albicans
P-aeruginosaThe activity on organism P. aeruginosa
CytotoxicityCytotoxicity of peptide
HemolysisNegative effect on red blood cell
Source
Nathan Ostberg, Yiannis Kaznessis, "Protegrin structure-activity
relationships: using homology modelsp of synthetic sequences to
determine structural characteristics important for activity", Peptides,
Volume 26, Issue 2, February 2005, Pages 197-206, ISSN 0196-9781,
10.1016/j.peptides.2004.09.020.
peplib documentation built on May 29, 2017, 10:52 p.m.
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Description Usage Format Source
Description
A data frame containing the antimicrobial activity for each peptide in
the AMPSequences dataset.
Usage
1 |
Format
SequenceThe sequence name
E-coliThe activity on organism E. coli
N-gonorrhoeae-F.62.The activity on organism N. gonorrhoeae
N-gonorrhoeae-FA.19.The activity on organism N. gonorrhoeae
L-monocytogenesThe activity on organism L. monocytogenes
C-albicansThe activity on organism C. albicans
P-aeruginosaThe activity on organism P. aeruginosa
CytotoxicityCytotoxicity of peptide
HemolysisNegative effect on red blood cell
Source
Nathan Ostberg, Yiannis Kaznessis, "Protegrin structure-activity relationships: using homology modelsp of synthetic sequences to determine structural characteristics important for activity", Peptides, Volume 26, Issue 2, February 2005, Pages 197-206, ISSN 0196-9781, 10.1016/j.peptides.2004.09.020.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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