API for peplib
Peptide Library Analysis Methods
| Global functions | |
|---|---|
| AMPSequences | Man page |
| AMPSequences.response | Man page |
| BIC | Man page |
| BIC,MotifModel-method | Man page |
| BIC,MotifModelSet-method | Man page |
| BIC.MotifModel | Source code |
| BIC.MotifModelSet | Source code |
| Descriptors | Man page |
| Descriptors-class | Man page |
| EM.SSOOPS.Linked | Source code |
| EMStep.OOPS | Source code |
| EMStep.SSOOPS | Source code |
| EMStep.ZOOPS | Source code |
| FiveTwoCV.Descriptors | Source code |
| FiveTwoCV.Sequences | Source code |
| FiveTwoCV.default | Source code |
| MetricParams | Man page |
| MetricParams-class | Man page |
| MotifModel | Man page |
| MotifModel-class | Man page |
| MotifModel.motifString | Source code |
| MotifModel.plotFits | Source code |
| MotifModel.plotPositions | Source code |
| MotifModel.plotStartingPosition | Source code |
| MotifModelSet | Man page |
| MotifModelSet-class | Man page |
| ROC | Source code |
| SHP2Sequences | Man page |
| Sequences | Man page |
| Sequences-class | Man page |
| TULASequences | Man page |
| [,Sequences-method | Man page |
| aclust | Man page Source code |
| autocorrelation | Source code |
| blosum50 | Man page |
| blosum62 | Man page |
| blosum90 | Man page |
| changeClusterFormat | Man page Source code |
| classify | Man page |
| classify,MotifModelSet-method | Man page |
| classify.MotifModelSet | Source code |
| createSWeights | Source code |
| decoys | Source code |
| default.MetricParams | Man page |
| defaultBaseMatrix | Man page |
| descriptors | Man page Source code |
| dist,Sequences-method | Man page |
| dist.Sequences | Source code |
| empty.df | Source code |
| empty.matrix | Source code |
| explode | Source code |
| factory.OOPS | Source code |
| factory.SSOOPS | Source code |
| factory.ZOOPS | Source code |
| factory.descriptor | Source code |
| findMinDistElement | Source code |
| logLik,MotifModel-method | Man page |
| logLik,MotifModelSet-method | Man page |
| logLik,OOPS-method | Man page |
| logLik,SSOOPS-method | Man page |
| logLik,ZOOPS-method | Man page |
| logLik.MotifModelSet | Source code |
| logLik.OOPS | Source code |
| logLik.SSOOPS | Source code |
| logLik.ZOOPS | Source code |
| modelStep | Source code |
| motifModel | Man page Source code |
| motifModelSet | Man page Source code |
| motifString | Man page |
| motifString,MotifModel-method | Man page |
| plot,Descriptors-method | Man page |
| plot,MotifModel-method | Man page |
| plot,MotifModelSet-method | Man page |
| plot,Sequences-method | Man page |
| plot.Descriptors | Source code |
| plot.MotifModel | Source code |
| plot.MotifModelSet | Source code |
| plot.Sequences | Source code |
| plotFits | Man page |
| plotFits,MotifModel-method | Man page |
| plotPositions | Man page |
| plotPositions,MotifModel-method | Man page |
| plotStartingPosition | Man page |
| plotStartingPosition,MotifModel-method | Man page |
| predict,MotifModel-method | Man page |
| predict,MotifModelSet-method | Man page |
| predict.MotifModel | Source code |
| predict.MotifModelSet | Source code |
| print,MotifModel-method | Man page |
| print.MotifModel | Source code |
| print.Sequences | Source code |
| processError | Source code |
| rbind,Sequences-method | Man page |
| rbind.Sequences | Source code |
| read.fasta | Man page Source code |
| read.sequences | Man page Source code |
| residuals,MotifModel-method | Man page |
| residuals,MotifModelSet-method | Man page |
| residuals.MotifModel | Source code |
| residuals.MotifModelSet | Source code |
| sHammingDist | Source code |
| sdist | Source code |
| simpleDescriptors | Man page Source code |
| wdist | Source code |
| write.fasta | Man page Source code |
| write.sequences | Man page Source code |
