API for perfectphyloR
Reconstruct Perfect Phylogenies from DNA Sequence Data

Global functions
HHGtest Man page Source code
MantelTest Man page Source code
RVcoeff Man page Source code
RVtest Man page Source code
RandIndex Man page Source code
RandIndexTest Man page Source code
assoTest Man page Source code
buildDend Man page Source code
checkCompatible Man page Source code
createHapMat Man page Source code
dCor Man page Source code
dCorTest Man page Source code
dendToNewick Man page Source code
distMatRcpp Man page Source code
ex_hapMatSmall_data Man page
ex_hapMat_data Man page
extractHaplos Man page Source code
findSNVs Man page Source code
fourGamete Man page Source code
getNextFromFocal Man page Source code
getNextLeftFocal Man page Source code
getNextRightFocal Man page Source code
getnSNVs Man page Source code
makeDend Man page Source code
makeNewickRec Man page Source code
makePartition Man page Source code
mantelStat Man page Source code
newNode Man page Source code
noVariation Man page Source code
orderColsAncestry Man page Source code
orderSNVs Man page Source code
perfectphyloR Man page
perfectphyloR-package Man page
performTest Man page Source code
phenoDist Man page
plotDend Man page Source code
rdistMatrix Man page Source code
reconstructPP Man page Source code
reconstructPPregion Man page Source code
selectWindow Man page Source code
splitTips Man page Source code
subsetHapMat Man page Source code
tdend Man page
testAssoDist Man page Source code
testDendAssoRI Man page Source code
vcftohapMat Man page Source code
perfectphyloR documentation built on March 8, 2021, 9:06 a.m.