orderColsAncestry: Utility function needed by 'orderSNVs'
In perfectphyloR: Reconstruct Perfect Phylogenies from DNA Sequence Data
Description
Usage
Arguments
Details
Value
See Also
Examples
View source: R/order_SNV_utility_functions.R
Description
This function orders the compatible SNVs in the window around the focal point by their ancestry.
Usage
1
Arguments
M
hapMat object with compatible SNVs.
Details
This function sorts columns of M as binary numbers in descending order.
The first row of M is the first digit of the binary numbers, the second row of M is the second digit, etc.
This guarantees that more ancestral SNVs appear before more recent SNVs.
Value
A hapMat object with SNVs ordered according to their ancestry.
See Also
Examples
1
perfectphyloR documentation built on March 8, 2021, 9:06 a.m.
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Description Usage Arguments Details Value See Also Examples
View source: R/order_SNV_utility_functions.R
Description
This function orders the compatible SNVs in the window around the focal point by their ancestry.
Usage
1 |
Arguments
M |
hapMat object with compatible SNVs. |
Details
This function sorts columns of M as binary numbers in descending order. The first row of M is the first digit of the binary numbers, the second row of M is the second digit, etc. This guarantees that more ancestral SNVs appear before more recent SNVs.
Value
A hapMat object with SNVs ordered according to their ancestry.
See Also
Examples
1 |
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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